OpenMM accelerated MMTK. - Kevin P. Bishop; Steve Constable; Nabil F. Faruk; Pierre-Nicholas Roy (Comput. Phys. Commun., 2015)

Accurate calculation of side chain packing and free energy with applications to protein molecular dynamics. - John M. Jumper; Nabil F. Faruk; Karl F. Freed; Tobin R. Sosnick (PLoS Comput. Biol., 2018)

Trajectory-based training enables protein simulations with accurate folding and Boltzmann ensembles in cpu-hours. - John M. Jumper; Nabil F. Faruk; Karl F. Freed; Tobin R. Sosnick (PLoS Comput. Biol., 2018)