ASAP: a machine learning framework for local protein properties. - Nadav Brandes; Dan Ofer; Michal Linial (Database J. Biol. Databases Curation, 2016)

Functional Evolutionary Modeling Exposes Overlooked Protein-Coding Genes Involved in Cancer. - Nadav Brandes; Nathan Linial; Michal Linial (ISBRA, 2020)

PWAS: Proteome-Wide Association Study. - Nadav Brandes; Nathan Linial; Michal Linial (RECOMB, 2020)

ProteinBERT: a universal deep-learning model of protein sequence and function. - Nadav Brandes; Dan Ofer; Yam Peleg; Nadav Rappoport; Michal Linial (Bioinform., 2022)