BRAT: bisulfite-treated reads analysis tool. - Elena Yavorska Harris; Nadia Ponts; Aleksandr Levchuk; Karine G. Le Roch; Stefano Lonardi (Bioinform., 2010)

Exploratory analysis of genomic segmentations with Segtools. - Orion J. Buske; Michael M. Hoffman; Nadia Ponts; Karine G. Le Roch; William Stafford Noble (BMC Bioinform., 2011)

BRAT-BW: efficient and accurate mapping of bisulfite-treated reads. - Elena Yavorska Harris; Nadia Ponts; Karine G. Le Roch; Stefano Lonardi (Bioinform., 2012)

NOrMAL: accurate nucleosome positioning using a modified Gaussian mixture model. - Anton Polishko; Nadia Ponts; Karine G. Le Roch; Stefano Lonardi (Bioinform., 2012)