Twister Segment Morphological Filtering. A New Method for Live Zebrafish Embryos Confocal Images Processing. - Miguel A. Luengo-Oroz; Emmanuel Faure; Benoit Lombardot; Rosario Sance; Paul Bourgine; Nadine Peyriéras; Andrés Santos (ICIP (5), 2007)

Counting number of cells and cell segmentation using advection-diffusion equations. - Peter Frolkovic; Karol Mikula; Nadine Peyriéras; Alex Sarti (Kybernetika, 2007)

A Framework for 4-D Biomedical Image Processing, Visualization and Analysis. - Matteo Campana; Barbara Rizzi; Camilo Melani; Paul Bourgine; Nadine Peyriéras; Alessandro Sarti (GRAPP, 2008)

Can voronoi diagram model cell geometries in early sea-urchin embryogenesis? - Miguel A. Luengo-Oroz; Louise Duloquin; Carlos Castro-Gonzalez; Thierry Savy; Emmanuel Faure; Benoit Lombardot; Paul Bourgine; Nadine Peyriéras; Andrés Santos (ISBI, 2008)

A Subjective Surfaces Based Segmentation for the Reconstruction oF Biological Cell Shape. - Matteo Campana; Cecilia Zanella; Barbara Rizzi; Paul Bourgine; Nadine Peyriéras; Alessandro Sarti (VISAPP (1), 2008)

Extraction of the Intercellular Skeleton from 2D Images of Embryogenesis Using Eikonal Equation and Advective Subjective Surface Method. - Paul Bourgine; Peter Frolkovic; Karol Mikula; Nadine Peyriéras; Mariana Remesíková (SSVM, 2009)

The Nonlinear Tensor Diffusion in Segmentation of Meaningful Biological Structures from Image Sequences of Zebrafish Embryogenesis. - Olga Drblíková; Karol Mikula; Nadine Peyriéras (SSVM, 2009)

Global Strategy of Active Machine Learning for Complex Systems: Embryogenesis Application on Cell Division Detection. - Emmanuel Faure; Carla Taramasco; Jacques Demongeot; Louise Duloquin; Benoit Lombardot; Nadine Peyriéras; Paul Bourgine (AINA Workshops, 2010)

Methods toward in vivo measurement of zebrafish epithelial and deep cell proliferation. - Matteo Campana; Benoit Maury; Marie Dutreix; Nadine Peyriéras; Alessandro Sarti (Comput. Methods Programs Biomed., 2010)

4D Embryogenesis image analysis using PDE methods of image processing. - Paul Bourgine; Róbert Cunderlík; Olga Stasová; Karol Mikula; Mariana Remesíková; Nadine Peyriéras; Barbara Rizzi; Alessandro Sarti (Kybernetika, 2010)

3D early embryogenesis image filtering by nonlinear partial differential equations. - Zuzana Krivá; Karol Mikula; Nadine Peyriéras; Barbara Rizzi; Alessandro Sarti; Olga Stasová (Medical Image Anal., 2010)

Cells Segmentation From 3-D Confocal Images of Early Zebrafish Embryogenesis. - Cecilia Zanella; Matteo Campana; Barbara Rizzi; Camilo Melani; Gonzalo Sanguinetti; Paul Bourgine; Karol Mikula; Nadine Peyriéras; Alessandro Sarti (IEEE Trans. Image Process., 2010)

Image processing challenges in the creation of spatiotemporal gene expression atlases of developing embryos. - Carlos Castro; Miguel Angel Luengo-Oroz; Louise Douloquin; Thierry Savy; Camilo Melani; Sophie Desnoulez; Paul Bourgine; Nadine Peyriéras; María-Jesus Ledesma-Carbayo; Andrés Santos (EMBC, 2011)

Processing pipeline for digitalizing the lineage tree of early zebrafish embryogenesis from multiharmonic imaging. - Miguel A. Luengo-Oroz; Thierry Savy; Jose L. Rubio-Guivernau; Louise Duloquin; Emmanuel Faure; Nicolas Olivier; María J. Ledesma-Carbayo; Delphine Debarre; Paul Bourgine; Emmanuel Beaurepaire; Nadine Peyriéras; Andrés Santos (ISBI, 2011)

Segmentation of 3D cell membrane images by PDE methods and its applications. - Karol Mikula; Nadine Peyriéras; Mariana Remesíková; Olga Stasová (Comput. Biol. Medicine, 2011)

Spatio-temporal filtering with morphological operators for robust cell migration estimation in "in-vivo" images. - David Pastor-Escuredo; Miguel A. Luengo-Oroz; Louise Duloquin; Benoit Lombardot; María J. Ledesma-Carbayo; Paul Bourgine; Nadine Peyriéras; Andrés Santos (ISBI, 2012)

Wavelet-based image fusion in multi-view three-dimensional microscopy. - Jose L. Rubio-Guivernau; Vasily Gurchenkov; Miguel A. Luengo-Oroz; Louise Duloquin; Paul Bourgine; Andrés Santos; Nadine Peyriéras; María J. Ledesma-Carbayo (Bioinform., 2012)

3D+t Morphological Processing: Applications to Embryogenesis Image Analysis. - Miguel A. Luengo-Oroz; David Pastor-Escuredo; Carlos Castro-Gonzalez; Emmanuel Faure; Thierry Savy; Benoit Lombardot; Jose L. Rubio-Guivernau; Louise Duloquin; María J. Ledesma-Carbayo; Paul Bourgine; Nadine Peyriéras; Andrés Santos (IEEE Trans. Image Process., 2012)

Methodology for Reconstructing Early Zebrafish Development From In Vivo Multiphoton Microscopy. - Miguel A. Luengo-Oroz; Jose L. Rubio-Guivernau; Emmanuel Faure; Thierry Savy; Louise Duloquin; Nicolas Olivier; David Pastor-Escuredo; María J. Ledesma-Carbayo; Delphine Debarre; Paul Bourgine; Emmanuel Beaurepaire; Nadine Peyriéras; et al. (IEEE Trans. Image Process., 2012)

A Digital Framework to Build, Visualize and Analyze a Gene Expression Atlas with Cellular Resolution in Zebrafish Early Embryogenesis. - Carlos Castro-Gonzalez; Miguel A. Luengo-Oroz; Louise Duloquin; Thierry Savy; Barbara Rizzi; Sophie Desnoulez; René Doursat; Yannick L. Kergosien; María J. Ledesma-Carbayo; Paul Bourgine; Nadine Peyriéras; Andrés Santos (PLoS Comput. Biol., 2014)

Cell Lineage Tree Reconstruction from Time Series of 3D Images of Zebrafish Embryogenesis. - Robert Spir; Karol Mikula; Nadine Peyriéras (ACCV Workshops (2), 2016)

Denoising 3D Microscopy Images of Cell Nuclei using Shape Priors on an Anisotropic Grid. - Mathieu Bouyrie; Cristina E. Manfredotti; Nadine Peyriéras; Antoine Cornuéjols (ICPRAM, 2016)

Cell Trajectory Clustering: Towards the Automated Identification of Morphogenetic Fields in Animal Embryogenesis. - Juan Raphael Diaz Simões; Paul Bourgine; Denis Grebenkov; Nadine Peyriéras (ICPRAM, 2017)

Quantification of cell behaviors and computational modeling show that cell directional behaviors drive zebrafish pectoral fin morphogenesis. - Joel Dokmegang; Hanh Nguyen; Elena Kardash; Thierry Savy; Matteo Cavaliere; Nadine Peyriéras; René Doursat (Bioinform., 2021)