The RESID Database of protein structure modifications and the NRL-3D Sequence-Structure Database. - John S. Garavelli; Zhenglin Hou; Nagarajan Pattabiraman; Robert M. Stephens (Nucleic Acids Res., 2001)

In-silico Screening using Flexible Ligand Binding Pockets: A Molecular Dynamics-based Approach. - Dakshanamurthy Sivanesan; Rajendram V. Rajnarayanan; Jason Doherty; Nagarajan Pattabiraman (J. Comput. Aided Mol. Des., 2005)

Information theory and signal processing methodology to identify nucleic acid-protein binding sequences in RNA-protein interactions. - Harry Shaw; Nagarajan Pattabiraman; Deborah Preston; Tatiana Ammosova; Yuri Obukhov; Sergei Nekhai; Ajit Kumar (CISS, 2019)

GlyGen data model and processing workflow. - Robel Y. Kahsay; Jeet Vora; Rahi Navelkar; Reza Mousavi; Brian C. Fochtman; Xavier Holmes; Nagarajan Pattabiraman; René Ranzinger; Rupali Mahadik; Tatiana Williamson; Sujeet Kulkarni; Gaurav Agarwal; et al. (Bioinform., 2020)