Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data. - Namita T. Gupta; Jason A. Vander Heiden; Mohamed Uduman; Daniel Gadala-Maria; Gur Yaari; Steven H. Kleinstein (Bioinform., 2015)

Graded Vector Representations of Immunoglobulins Produced in Response to West Nile Virus. - Trevor Cohen; Dominic Widdows; Jason A. Vander Heiden; Namita T. Gupta; Steven H. Kleinstein (QI, 2016)

VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements. - Inimary T. Toby; Mikhail K. Levin; Edward Salinas; Scott Christley; Sanchita Bhattacharya; Felix Breden; Adam Buntzman; Brian Corrie; John M. Fonner; Namita T. Gupta; Uri Hershberg; Nishanth Marthandan; et al. (BMC Bioinform., 2016)