ASmodeler: gene modeling of alternative splicing from genomic alignment of mRNA, EST and protein sequences. - Namshin Kim; Seokmin Shin; Sanghyuk Lee (Nucleic Acids Res., 2004)

ECgene: genome annotation for alternative splicing. - Pora Kim; Namshin Kim; Younghee Lee; Bumjin Kim; Youngah Shin; Sanghyuk Lee (Nucleic Acids Res., 2005)

ASePCR: alternative splicing electronic RT-PCR in multiple tissues and organs. - Namshin Kim; Dajeong Lim; Sanghyuk Lee; Heebal Kim (Nucleic Acids Res., 2005)

ChimerDB - a knowledgebase for fusion sequences. - Namshin Kim; Pora Kim; Seungyoon Nam; Seokmin Shin; Sanghyuk Lee (Nucleic Acids Res., 2006)

QPRIMER: a quick web-based application for designing conserved PCR primers from multigenome alignments. - Namshin Kim; Christopher J. Lee (Bioinform., 2007)

Three-Dimensional Phylogeny Explorer: Distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption with 3D visualization. - Namshin Kim; Christopher J. Lee (BMC Bioinform., 2007)

The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species. - Namshin Kim; Alexander V. Alekseyenko; Meenakshi Roy; Christopher J. Lee (Nucleic Acids Res., 2007)

ECgene: an alternative splicing database update. - Yeunsook Lee; Younghee Lee; Bumjin Kim; Youngah Shin; Seungyoon Nam; Pora Kim; Namshin Kim; Won-Hyong Chung; Jaesang Kim; Sanghyuk Lee (Nucleic Acids Res., 2007)

ChimerDB 2.0 - a knowledgebase for fusion genes updated. - Pora Kim; Suhyeon Yoon; Namshin Kim; Sanghyun Lee; Minjeong Ko; Haeseung Lee; Hyunjung Kang; Jaesang Kim; Sanghyuk Lee (Nucleic Acids Res., 2010)

Methodology and software to detect viral integration site hot-spots. - Angela P. Presson; Namshin Kim; Xiaofei Yan; Irvin S. Y. Chen; Sanggu Kim (BMC Bioinform., 2011)