Automatic Wrapper Generation for Semi-Structured Biological Data Based on Table Structure Identification. - Liangyou Chen; Hasan M. Jamil; Nan Wang 002 (DEXA Workshops, 2003)

Automatic Composite Wrapper Generation for Semi-Structured Biological Data Based on Table Structure Identification. - Liangyou Chen; Hasan M. Jamil; Nan Wang 002 (SIGMOD Rec., 2004)

ProtQuant: a tool for the label-free quantification of MudPIT proteomics data. - Susan M. Bridges; G. Bryce Magee; Nan Wang 002; W. Paul Williams; Shane C. Burgess; Bindu Nanduri (BMC Bioinform., 2007)

AgBase: a unified resource for functional analysis in agriculture. - Fiona M. McCarthy; Susan M. Bridges; Nan Wang 002; G. Bryce Magee; W. Paul Williams; Dawn S. Luthe; Shane C. Burgess (Nucleic Acids Res., 2007)

Integrating Evidence for Evaluation of Potential Novel Protein-coding Genes Using Bayesian Networks. - Nan Wang 002; Changhe Yuan; Shane C. Burgess; Bindu Nanduri; Mark L. Lawrence; Susan Bridges (BIOCOMP, 2008)

Discovery of Biomarker Genes from Earthworm Microarray Data by Discriminant Analysis and Clustering. - Ying Li; Nan Wang 002; Edward J. Perkins; Ping Gong 001 (IJCBS, 2009)

Proteogenomic Mapping for Structural Annotation of Prokaryote Genomes. - Nan Wang 002; Shane C. Burgess; Mark L. Lawrence; Susan Bridges (IJCBS, 2009)

Gene Model Detection Using Mass Spectrometry. - Bindu Nanduri; Nan Wang 002; Mark L. Lawrence; Susan M. Bridges; Shane C. Burgess (Proteome Bioinformatics, 2010)

Performance evaluation of the time-delayed dynamic Bayesian network approach to inferring gene regulatory networks from time series microarray data. - Haoni Li; Peng Li; Chaoyang Zhang; Nan Wang 002; Ping Gong 001; Edward J. Perkins (BCB, 2010)

Gene selection using 1-norm regularization for multi-class microarray data. - Xiaofei Nan; Nan Wang 002; Ping Gong 001; Chaoyang Zhang; Yixin Chen 002; Dawn Wilkins (BIBM, 2010)

Reconstruction of gene regulatory networks using state space model. - Xi Wu 007; Nan Wang 002; Chaoyang Zhang; Ping Gong 001 (BIBM Workshops, 2011)

RefNetBuilder: a platform for construction of integrated reference gene regulatory networks from expressed sequence tags. - Ying Li; Ping Gong 001; Edward J. Perkins; Chaoyang Zhang; Nan Wang 002 (BMC Bioinform., 2011)

The Proteogenomic Mapping Tool. - William S. Sanders; Nan Wang 002; Susan M. Bridges; Brandon M. Malone; Yoginder S. Dandass; Fiona M. McCarthy; Bindu Nanduri; Mark L. Lawrence; Shane C. Burgess (BMC Bioinform., 2011)

State Space Model with hidden variables for reconstruction of gene regulatory networks. - Xi Wu 007; Peng Li; Nan Wang 002; Ping Gong 001; Edward J. Perkins; Youping Deng; Chaoyang Zhang (BMC Syst. Biol., 2011)

Biomarker discovery using 1-norm regularization for multiclass earthworm microarray gene expression data. - Xiaofei Nan; Nan Wang 002; Ping Gong 001; Chaoyang Zhang; Yixin Chen 002; Dawn Wilkins (Neurocomputing, 2012)

Deciphering chemically-induced reversible neurotoxicity by reconstructing perturbed pathways from time series microarray gene expression data. - Yi Yang; Si Li; Andrew S. Maxwell; Natalie D. Barker; Yan Peng; Ying Li; Haoni Li; Xi Wu 007; Peng Li; Tao Huang; Chenhua Zhang; Nan Wang 002; et al. (GENSiPS, 2013)

Differential reconstructed gene interaction networks for deriving toxicity threshold in chemical risk assessment. - Yi Yang; Andrew S. Maxwell; Xiaowei Zhang 005; Nan Wang 002; Edward J. Perkins; Chaoyang Zhang; Ping Gong 001 (BMC Bioinform., 2013)

SeqAssist: a novel toolkit for preliminary analysis of next-generation sequencing data. - Yan Peng; Andrew S. Maxwell; Natalie D. Barker; Jennifer G. Laird; Alan J. Kennedy; Nan Wang 002; Chaoyang Zhang; Ping Gong 001 (BMC Bioinform., 2014)

Gene regulatory network inference and validation using relative change ratio analysis and time-delayed dynamic Bayesian network. - Peng Li; Ping Gong 001; Haoni Li; Edward J. Perkins; Nan Wang 002; Chaoyang Zhang (EURASIP J. Bioinform. Syst. Biol., 2014)

Factorial analysis of error correction performance using simulated next-generation sequencing data. - Isaac Akogwu; Nan Wang 002; Chaoyang Zhang; Hwanseok Choi; Huixiao Hong; Ping Gong 001 (BIBM, 2016)

Structure-activity relationship-based chemical classification of highly imbalanced Tox21 datasets. - Gabriel Idakwo; Sundar Thangapandian; Joseph Luttrell IV; Yan Li; Nan Wang 002; Zhaoxian Zhou; Huixiao Hong; Bei Yang; Chaoyang Zhang; Ping Gong 001 (J. Cheminformatics, 2020)