Shimmer: detection of genetic alterations in tumors using next-generation sequence data. - Nancy F. Hansen; Jared J. Gartner; Lan Mei; Yardena Samuels; James C. Mullikin (Bioinform., 2013)

Evaluation of variant detection software for pooled next-generation sequence data. - Howard Huang; James C. Mullikin; Nancy F. Hansen (BMC Bioinform., 2015)

Variant Calling From Next Generation Sequence Data. - Nancy F. Hansen (Statistical Genomics, 2016)

NovoGraph: Genome graph construction from multiple long-read de novo assemblies. - Evan Biederstedt; Jeffrey C. Oliver; Nancy F. Hansen; Aarti Jajoo; Nathan A. Dunn; Andrew Olson; Ben Busby; Alexander T. Dilthey (F1000Research, 2018)