Subfamily HMMS in Functional Genomics. - Duncan P. Brown; Nandini Krishnamurthy; Joseph M. Dale; Wayne Christopher; Kimmen Sjölander (Pacific Symposium on Biocomputing, 2005)

Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis. - Jake Gunn Glanville; Dan Kirshner 001; Nandini Krishnamurthy; Kimmen Sjölander (Nucleic Acids Res., 2007)

Automated Protein Subfamily Identification and Classification. - Duncan P. Brown; Nandini Krishnamurthy; Kimmen Sjölander (PLoS Comput. Biol., 2007)

The Generation Challenge Programme comparative plant stress-responsive gene catalogue. - Samart Wanchana; Supat Thongjuea; Victor Jun M. Ulat; Mylah Anacleto; Ramil Mauleon; Matthieu G. Conte; Mathieu Rouard; Manuel Ruiz; Nandini Krishnamurthy; Kimmen Sjölander; Theo J. L. van Hintum; Richard M. Bruskiewich (Nucleic Acids Res., 2008)