Prediction of zinc-binding sites in proteins from sequence. - Nanjiang Shu; Tuping Zhou; Sven Hovmöller (Bioinform., 2008)

A novel method for accurate one-dimensional protein structure prediction based on fragment matching. - Tuping Zhou; Nanjiang Shu; Sven Hovmöller (Bioinform., 2010)

KalignP: Improved multiple sequence alignments using position specific gap penalties in Kalign2. - Nanjiang Shu; Arne Elofsson (Bioinform., 2011)

The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides. - Konstantinos D. Tsirigos; Christoph Peters; Nanjiang Shu; Lukas Käll; Arne Elofsson (Nucleic Acids Res., 2015)

Inclusion of dyad-repeat pattern improves topology prediction of transmembrane β-barrel proteins. - Sikander Hayat; Christoph Peters; Nanjiang Shu; Konstantinos D. Tsirigos; Arne Elofsson (Bioinform., 2016)

Improved topology prediction using the terminal hydrophobic helices rule. - Christoph Peters; Konstantinos D. Tsirigos; Nanjiang Shu; Arne Elofsson (Bioinform., 2016)

SubCons: a new ensemble method for improved human subcellular localization predictions. - Marco Salvatore; Per Warholm; Nanjiang Shu; Walter Basile; Arne Elofsson (Bioinform., 2017)

ProQ3D: improved model quality assessments using deep learning. - Karolis Uziela; David Menéndez Hurtado; Nanjiang Shu; Björn Wallner; Arne Elofsson (Bioinform., 2017)

The evolutionary history of topological variations in the CPA/AT transporters. - Govindarajan Sudha; Claudio Bassot; John Lamb; Nanjiang Shu; Yan Huang; Arne Elofsson (PLoS Comput. Biol., 2021)