TANDEM: a two-stage approach to maximize interpretability of drug response models based on multiple molecular data types. - Nanne Aben; Daniel J. Vis; Magali Michaut; Lodewyk F. A. Wessels (Bioinform., 2016)

iTOP: inferring the topology of omics data. - Nanne Aben; Johan A. Westerhuis; Yipeng Song; Henk A. L. Kiers; Magali Michaut; Age K. Smilde; Lodewyk F. A. Wessels (Bioinform., 2018)

Principal component analysis of binary genomics data. - Yipeng Song; Johan A. Westerhuis; Nanne Aben; Magali Michaut; Lodewyk F. A. Wessels; Age K. Smilde (Briefings Bioinform., 2019)

Active WeaSuL: Improving Weak Supervision with Active Learning. - Samantha Biegel; Rafah El-Khatib; Luiz Otávio Vilas Boas Oliveira; Max Baak; Nanne Aben (CoRR, 2021)

Towards Large-Scale Training of Pathology Foundation Models. - kaiko ai; Nanne Aben; Edwin D. de Jong; Ioannis Gatopoulos; Nicolas Känzig; Mikhail Karasikov; Axel Lagré; Roman Moser; Joost van Doorn; Fei Tang (CoRR, 2024)