Scouting enzyme behavior. - Naoki Matsumaru; Silvano Colombano; Klaus-Peter Zauner (IEEE Congress on Evolutionary Computation, 2002)

Artificial Life as an Aid to Astrobiology: Testing Life Seeking Techniques. - Florian Centler; Peter Dittrich; Lawrence Ku; Naoki Matsumaru; Jeffrey O. Pfaffmann; Klaus-Peter Zauner (ECAL, 2003)

Self-Adaptive Scouting - Autonomous Experimentation for Systems Biology. - Naoki Matsumaru; Florian Centler; Klaus-Peter Zauner; Peter Dittrich (EvoWorkshops, 2004)

Organization-oriented chemical programming for the organic design of distributed computing systems. - Naoki Matsumaru; Peter Dittrich (BIONETICS, 2006)

Chemical Organization Theory Applied to Virus Dynamics (Theorie chemischer Organisationen angewendet auf Infektionsmodelle). - Naoki Matsumaru; Florian Centler; Pietro Speroni di Fenizio; Peter Dittrich (it Inf. Technol., 2006)

Organization-Oriented Chemical Programming. - Peter Dittrich; Naoki Matsumaru (HIS, 2007)

Hill Kinetics Meets P Systems: A Case Study on Gene Regulatory Networks as Computing Agents in silico and in vivo. - Thomas Hinze; Sikander Hayat; Thorsten Lenser; Naoki Matsumaru; Peter Dittrich (Workshop on Membrane Computing, 2007)

Designing a chemical program using chemical organization theory. - Naoki Matsumaru; Thorsten Lenser; Thomas Hinze; Peter Dittrich (BMC Syst. Biol., 2007)

Chemical Organization Theory as a Theoretical Base for Chemical Computing. - Naoki Matsumaru; Florian Centler; Pietro Speroni di Fenizio; Peter Dittrich (Int. J. Unconv. Comput., 2007)

Toward Organization-Oriented Chemical Programming: A Case Study with the Maximal Independent Set Problem. - Naoki Matsumaru; Thorsten Lenser; Thomas Hinze; Peter Dittrich (Advances in Biologically Inspired Information Systems, 2007)

Chemical organizations in living systems. - Peter Dittrich; Florian Centler; Christoph Kaleta; Naoki Matsumaru; Pietro Speroni di Fenizio (ALIFE, 2008)

Tracking the Evolution of Chemical Computing Networks. - Thorsten Lenser; Naoki Matsumaru; Thomas Hinze; Peter Dittrich (ALIFE, 2008)

Biosignal-Based Computing By AHL Induced Synthetic Gene Regulatory Networks - From an in vivo Flip-Flop Implementation to Programmable Computing Agents. - Thomas Hinze; Thorsten Lenser; Naoki Matsumaru; Peter Dittrich; Sikander Hayat (BIOSIGNALS (1), 2008)

Event-Driven Metamorphoses of P Systems. - Thomas Hinze; Raffael Faßler; Thorsten Lenser; Naoki Matsumaru; Peter Dittrich (Workshop on Membrane Computing, 2008)

Flying over Mount Improbable. - Pietro Speroni di Fenizio; Naoki Matsumaru; Peter Dittrich (ECAL (1), 2009)

Organization-Oriented Chemical Programming of Distributed Artifacts. - Naoki Matsumaru; Thomas Hinze; Peter Dittrich (Int. J. Nanotechnol. Mol. Comput., 2009)

Chemical programming to exploit chemical reaction systems for computation. - Naoki Matsumaru (2009)

Organisation-Oriented Chemical Programming. - Naoki Matsumaru; Peter Kreyssig; Peter Dittrich (Organic Computing, 2011)

Monitoring of premonitories septic shock in heart-rate variability. - Yasunari Yokota; Yoko Kawamura; Naoki Matsumaru; Kunihiro Shirai (BHI, 2012)