Extension of Sinkhorn Method: Optimal Movement Estimation of Agents Moving at Constant Velocity. - Daigo Okada; Naotoshi Nakamura; Takuya Wada; Ayako Iwasaki; Ryo Yamada (CoRR, 2019)

Tree Edit Distance with Variables. Measuring the Similarity between Mathematical Formulas. - Tatsuya Akutsu; Tomoya Mori; Naotoshi Nakamura; Satoshi Kozawa; Yuhei Ueno; Thomas N. Sato (CoRR, 2021)

On the Complexity of Tree Edit Distance with Variables. - Tatsuya Akutsu; Tomoya Mori; Naotoshi Nakamura; Satoshi Kozawa; Yuhei Ueno; Thomas N. Sato (ISAAC, 2022)

Multiscale modeling of HBV infection integrating intra- and intercellular viral propagation to analyze extracellular viral markers. - Kosaku Kitagawa; Kwang Su Kim; Masashi Iwamoto; Sanae Hayashi; Hyeongki Park; Takara Nishiyama; Naotoshi Nakamura; Yasuhisa Fujita; Shinji Nakaoka; Kazuyuki Aihara; Alan S. Perelson; Lena Allweiss; et al. (PLoS Comput. Biol., 2024)

Prediction of cccDNA dynamics in hepatitis B patients by a combination of serum surrogate markers. - Kwang Su Kim; Masashi Iwamoto; Kosaku Kitagawa; Hyeongki Park; Sanae Hayashi; Senko Tsukuda; Takeshi Matsui; Masanori Atsukawa; Kentaro Matsuura; Natthaya Chuaypen; Pisit Tangkijvanich; Lena Allweiss; et al. (PLoS Comput. Biol., 2025)