RPG: the Ribosomal Protein Gene database. - Akihiro Nakao; Maki Yoshihama; Naoya Kenmochi (Nucleic Acids Res., 2004)

New Maximum Likelihood Estimators for Eukaryotic Intron Evolution. - Hung D. Nguyen 003; Maki Yoshihama; Naoya Kenmochi (PLoS Comput. Biol., 2005)

Correction: New Maximum Likelihood Estimators for Eukaryotic Intron Evolution. - Hung D. Nguyen 003; Maki Yoshihama; Naoya Kenmochi (PLoS Comput. Biol., 2006)

Authors' Reply. - Hung D. Nguyen 003; Maki Yoshihama; Naoya Kenmochi (PLoS Comput. Biol., 2006)

A detection method for intronic snoRNA genes using extended-weight-updating SOM with appearance probability of bases. - Kunihito Yamamori; Takuro Matsuo; Junichi Iwakiri; Naoya Kenmochi; Ikuo Yoshihara (Artif. Life Robotics, 2013)

A detection method for snoRNA modification domain by fully indexable dictionary retrieving. - Takayuki Yamamoto; Kunihito Yamamori; Naoya Kenmochi; Masaru Aikawa (Artif. Life Robotics, 2014)