Control of decoherence in open quantum systems using feedback. - Narayan Ganesan; Tzyh Jong Tarn (CDC/ECC, 2005)

Quantum internal model principle and enhanced disturbance decoupling. - Narayan Ganesan; Tzyh Jong Tarn (CDC, 2007)

Sorting on architecturally diverse computer systems. - Roger D. Chamberlain; Narayan Ganesan (HPRCTA@SC, 2009)

Accelerating HMMER on GPUs by implementing hybrid data and task parallelism. - Narayan Ganesan; Roger D. Chamberlain; Jeremy Buhler; Michela Taufer (BCB, 2010)

FENZI: GPU-Enabled Molecular Dynamics Simulations of Large Membrane Regions Based on the CHARMM Force Field and PME. - Narayan Ganesan; Michela Taufer; Brad A. Bauer; Sandeep Patel (IPDPS Workshops, 2011)

Structural, dynamic, and electrostatic properties of fully hydrated DMPC bilayers from molecular dynamics simulations accelerated with graphical processing units (GPUs). - Narayan Ganesan; Brad A. Bauer; Timothy R. Lucas; Sandeep Patel; Michela Taufer (J. Comput. Chem., 2011)

Simulation and study of large-scale bacteria-materials interactions via BioScape enabled by GPUs. - Jie Li 004; Vishakha Sharma 001; Narayan Ganesan; Adriana B. Compagnoni (BCB, 2012)

Achieving decoherence suppression in open quantum systems by utilizing the model of environmental interactions. - Narayan Ganesan; Tzyh Jong Tarn (ACC, 2013)

GPU-Enabled Macromolecular Simulation: Challenges and Opportunities. - Michela Taufer; Narayan Ganesan; Sandeep Patel (Comput. Sci. Eng., 2013)

Simulation of Complex Biochemical Pathways in 3D Process Space via Heterogeneous Computing Platform: Preliminary Results. - Jie Li 004; Amin Salighehdar; Narayan Ganesan (ARC, 2014)

Process Simulation of Complex Biochemical Pathways in Explicit 3D Space Enabled by Heterogeneous Computing Platform. - Jie Li 004; Amin Salighehdar; Narayan Ganesan (IPDPS Workshops, 2014)

Fine-Grained Acceleration of HMMER 3.0 via Architecture-Aware Optimization on Massively Parallel Processors. - Hanyu Jiang; Narayan Ganesan (IPDPS Workshops, 2015)

Computational Framework for in-Silico Study of Virtual Cell Biology via Process Simulation and Multiscale Modeling. - Hanyu Jiang; Morisa Manzella; Luka Djapic; Narayan Ganesan (BCB, 2016)

CUDAMPF: a multi-tiered parallel framework for accelerating protein sequence search in HMMER on CUDA-enabled GPU. - Hanyu Jiang; Narayan Ganesan (BMC Bioinform., 2016)

Process Simulation of Complex Biological Pathways in Physical Reactive Space and Reformulated for Massively Parallel Computing Platforms. - Narayan Ganesan; Jie Li 004; Vishakha Sharma 001; Hanyu Jiang; Adriana B. Compagnoni (IEEE ACM Trans. Comput. Biol. Bioinform., 2016)

CUDAMPF++: A Proactive Resource Exhaustion Scheme for Accelerating Homologous Sequence Search on CUDA-Enabled GPU. - Hanyu Jiang; Narayan Ganesan; Yu-Dong Yao (IEEE Trans. Parallel Distributed Syst., 2018)