Boundary Learning by Optimization with Topological Constraints. - Viren Jain; Benjamin Bollmann; Mark Richardson; Daniel R. Berger; Moritz Helmstaedter; Kevin L. Briggman; Winfried Denk; Jared B. Bowden; John M. Mendenhall; Wickliffe C. Abraham; Kristen M. Harris; Narayanan Kasthuri; et al. (CVPR, 2010)

The open connectome project data cluster: scalable analysis and vision for high-throughput neuroscience. - Randal C. Burns; Kunal Lillaney; Daniel R. Berger; Logan Grosenick; Karl Deisseroth; R. Clay Reid; William R. Gray Roncal; Priya Manavalan; Davi Bock; Narayanan Kasthuri; Michael M. Kazhdan; Stephen J. Smith; et al. (SSDBM, 2013)

Exploring the Connectome: Petascale Volume Visualization of Microscopy Data Streams. - Johanna Beyer; Markus Hadwiger; Ali K. Al-Awami; Won-Ki Jeong; Narayanan Kasthuri; Jeff W. Lichtman; Hanspeter Pfister (IEEE Computer Graphics and Applications, 2013)

ConnectomeExplorer: Query-Guided Visual Analysis of Large Volumetric Neuroscience Data. - Johanna Beyer; Ali K. Al-Awami; Narayanan Kasthuri; Jeff W. Lichtman; Hanspeter Pfister; Markus Hadwiger (IEEE Trans. Vis. Comput. Graph., 2013)

Volumetric Exploitation of Synaptic Information using Context Localization and Evaluation. - William R. Gray Roncal; Verena Kaynig-Fittkau; Narayanan Kasthuri; Daniel R. Berger; Joshua T. Vogelstein; Lindsey R. Fernandez; Jeff W. Lichtman; R. Jacob Vogelstein; Hanspeter Pfister; Gregory D. Hager (CoRR, 2014)

Automatic Annotation of Axoplasmic Reticula in Pursuit of Connectomes. - Ayushi Sinha; William R. Gray Roncal; Narayanan Kasthuri; Ming Chuang; Priya Manavalan; Dean Kleissas; Joshua T. Vogelstein; R. Jacob Vogelstein; Randal C. Burns; Jeff W. Lichtman; Michael M. Kazhdan (CoRR, 2014)

Automatic Annotation of Axoplasmic Reticula in Pursuit of Connectomes using High-Resolution Neural EM Data. - Ayushi Sinha; William R. Gray Roncal; Narayanan Kasthuri; Jeff W. Lichtman; Randal C. Burns; Michael M. Kazhdan (CoRR, 2014)

NeuroLines: A Subway Map Metaphor for Visualizing Nanoscale Neuronal Connectivity. - Ali K. Al-Awami; Johanna Beyer; Hendrik Strobelt; Narayanan Kasthuri; Jeff W. Lichtman; Hanspeter Pfister; Markus Hadwiger (IEEE Trans. Vis. Comput. Graph., 2014)

Design and Evaluation of Interactive Proofreading Tools for Connectomics. - Daniel Haehn; Seymour Knowles-Barley; Mike Roberts 001; Johanna Beyer; Narayanan Kasthuri; Jeff W. Lichtman; Hanspeter Pfister (IEEE Trans. Vis. Comput. Graph., 2014)

Large-scale automatic reconstruction of neuronal processes from electron microscopy images. - Verena Kaynig; Amelio Vázquez Reina; Seymour Knowles-Barley; Mike Roberts 001; Thouis R. Jones; Narayanan Kasthuri; Eric L. Miller 001; Jeff Lichtman; Hanspeter Pfister (Medical Image Anal., 2015)

Quantifying mesoscale neuroanatomy using X-ray microtomography. - Eva L. Dyer; William R. Gray Roncal; Hugo L. Fernandes; Doga Gürsoy; Xianghui Xiao; Joshua T. Vogelstein; Chris Jacobsen; Konrad P. Körding; Narayanan Kasthuri (CoRR, 2016)

RhoanaNet Pipeline: Dense Automatic Neural Annotation. - Seymour Knowles-Barley; Verena Kaynig; Thouis Ray Jones; Alyssa Wilson; Joshua Morgan; Dongil Lee; Daniel R. Berger; Narayanan Kasthuri; Jeff W. Lichtman; Hanspeter Pfister (CoRR, 2016)

From sample to knowledge: Towards an integrated approach for neuroscience discovery. - William R. Gray Roncal; Eva L. Dyer; Doga Gürsoy; Konrad P. Körding; Narayanan Kasthuri (CoRR, 2016)

NeuroBlocks - Visual Tracking of Segmentation and Proofreading for Large Connectomics Projects. - Ali K. Al-Awami; Johanna Beyer; Daniel Haehn; Narayanan Kasthuri; Jeff W. Lichtman; Hanspeter Pfister; Markus Hadwiger (IEEE Trans. Vis. Comput. Graph., 2016)

High-Throughput Neuroanatomy and Trigger-Action Programming: A Case Study in Research Automation. - Ryan Chard; Rafael Vescovi; Ming Du; Hanyu Li; Kyle Chard; Steven Tuecke; Narayanan Kasthuri; Ian T. Foster (AI-Science@HPDC, 2018)

International Neuroscience Initiatives through the Lens of High-Performance Computing. - Kristofer E. Bouchard; James B. Aimone; Miyoung Chun; Thomas Dean; Michael Denker; Markus Diesmann; David Donofrio; Loren M. Frank; Narayanan Kasthuri; Christof Koch; Oliver Rübel; Horst D. Simon; et al. (Computer, 2018)

Scaling Distributed Training of Flood-Filling Networks on HPC Infrastructure for Brain Mapping. - Wushi Dong; Nicola J. Ferrier; Narayanan Kasthuri; Peter Littlewood; Murat Keçeli; Rafael Vescovi; Hanyu Li; Corey Adams; Elise Jennings; Samuel Flender; Thomas D. Uram; Venkatram Vishwanath (DLS@SC, 2019)

Toward an Automated HPC Pipeline for Processing Large Scale Electron Microscopy Data. - Rafael Vescovi; Hanyu Li; Jeffery Kinnison; Murat Keçeli; Misha Salim; Narayanan Kasthuri; Thomas D. Uram; Nicola J. Ferrier (XLOOP@SC, 2020)

AxonEM Dataset: 3D Axon Instance Segmentation of Brain Cortical Regions. - Donglai Wei 001; Kisuk Lee; Hanyu Li; Ran Lu; J. Alexander Bae; Zequan Liu; Lifu Zhang; Márcia dos Santos; Zudi Lin; Thomas D. Uram; Xueying Wang 002; Ignacio Arganda-Carreras; et al. (MICCAI (1), 2021)

Locality, Delays, and Internal Feedback in Sensorimotor Control Part 1: Motivation and Introductory Theory. - Josefin Stenberg; Jing Shuang Li; Anish A. Sarma; Terrence J. Sejnowski; Gwyneth Card; Elizabeth S. Heckscher; Narayanan Kasthuri; John C. Doyle 001 (CoRR, 2021)

Multi-modal imaging of a single mouse brain over five orders of magnitude of resolution. - Sean Foxley; Vandana Sampathkumar; Vincent De Andrade; Scott Trinkle; Anastasia Sorokina; Katrina Norwood; Patrick La Riviere; Narayanan Kasthuri (NeuroImage, 2021)

The role of spatial embedding in mouse brain networks constructed from diffusion tractography and tracer injections. - Scott Trinkle; Sean Foxley; Gregg A. Wildenberg; Narayanan Kasthuri; Patrick La Riviere (NeuroImage, 2021)

Distributed Optimization for Nonrigid Nano-Tomography. - Viktor V. Nikitin; Vincent De Andrade; Azat Slyamov; Benjamin J. Gould; Yuepeng Zhang; Vandana Sampathkumar; Narayanan Kasthuri; Doga Gürsoy; Francesco De Carlo (IEEE Trans. Computational Imaging, 2021)

Internal Feedback in Biological Control: Architectures and Examples. - Anish A. Sarma; Jing Shuang Lisa Li; Josefin Stenberg; Gwyneth Card; Elizabeth S. Heckscher; Narayanan Kasthuri; Terrence J. Sejnowski; John C. Doyle 001 (ACC, 2022)