ArchDB: automated protein loop classification as a tool for structural genomics. - Jordi Espadaler; Narcis Fernandez-Fuentes; Antonio Hermoso; Enrique Querol; Francesc X. Avilés; Michael J. E. Sternberg; Baldomero Oliva (Nucleic Acids Res., 2004)

ArchPRED: a template based loop structure prediction server. - Narcis Fernandez-Fuentes; Jun Zhai; András Fiser (Nucleic Acids Res., 2006)

Comparative protein structure modeling by combining multiple templates and optimizing sequence-to-structure alignments. - Narcis Fernandez-Fuentes; Brajesh Kumar Rai; Carlos J. Madrid-Aliste; J. Eduardo Fajardo; András Fiser (Bioinform., 2007)

M4T: a comparative protein structure modeling server. - Narcis Fernandez-Fuentes; Carlos J. Madrid-Aliste; Brajesh Kumar Rai; J. Eduardo Fajardo; András Fiser (Nucleic Acids Res., 2007)

Structural Characteristics of Novel Protein Folds. - Narcis Fernandez-Fuentes; Joseph M. Dybas; András Fiser (PLoS Comput. Biol., 2010)

Improving the prediction of protein binding sites by combining heterogeneous data and Voronoi Diagrams. - Joan Segura; Pamela F. Jones; Narcis Fernandez-Fuentes (BMC Bioinform., 2011)

PCRPi-DB: a database of computationally annotated hot spots in protein interfaces. - Joan Segura; Narcis Fernandez-Fuentes (Nucleic Acids Res., 2011)

A holistic in silico approach to predict functional sites in protein structures. - Joan Segura; Pamela F. Jones; Narcis Fernandez-Fuentes (Bioinform., 2012)

CAPS-DB: a structural classification of helix-capping motifs. - Joan Segura; Baldomero Oliva; Narcis Fernandez-Fuentes (Nucleic Acids Res., 2012)

Smotifs as structural local descriptors of supersecondary elements: classification, completeness and applications. - Jaume Bonet; András Fiser; Baldo Oliva; Narcis Fernandez-Fuentes (Bio Algorithms Med Syst., 2014)

Frag'r'Us: knowledge-based sampling of protein backbone conformations for de novo structure-based protein design. - Jaume Bonet; Joan Segura; Joan Planas-Iglesias; Baldomero Oliva; Narcis Fernandez-Fuentes (Bioinform., 2014)

ArchDB 2014: structural classification of loops in proteins. - Jaume Bonet; Joan Planas-Iglesias; Javier García-García 002; Manuel Alejandro Marín-López; Narcis Fernandez-Fuentes; Baldo Oliva (Nucleic Acids Res., 2014)

Knowledge-based modeling of peptides at protein interfaces: PiPreD. - Baldo Oliva; Narcis Fernandez-Fuentes (Bioinform., 2015)

Genome-wide prediction of prokaryotic two-component system networks using a sequence-based meta-predictor. - Altan Kara; Martin J. Vickers; Martin T. Swain; David E. Whitworth; Narcis Fernandez-Fuentes (BMC Bioinform., 2015)

MetaPred2CS: a sequence-based meta-predictor for protein-protein interactions of prokaryotic two-component system proteins. - Altan Kara; Martin J. Vickers; Martin T. Swain; David E. Whitworth; Narcis Fernandez-Fuentes (Bioinform., 2016)

On the mechanisms of protein interactions: predicting their affinity from unbound tertiary structures. - Manuel Alejandro Marín-López; Joan Planas-Iglesias; Joaquim Aguirre-Plans; Jaume Bonet; Javier García-García 002; Narcis Fernandez-Fuentes; Baldo Oliva (Bioinform., 2018)

Mining drug-target and drug-adverse drug reaction databases to identify target-adverse drug reaction relationships. - Cristiano Galletti; Patricia Mirela Bota; Baldo Oliva; Narcis Fernandez-Fuentes (Database J. Biol. Databases Curation, 2021)

SPServer: split-statistical potentials for the analysis of protein structures and protein-protein interactions. - Joaquim Aguirre-Plans; Alberto Meseguer; Ruben Molina-Fernandez; Manuel Alejandro Marín-López; Gaurav Jumde; Kevin Casanova; Jaume Bonet; Oriol Fornes; Narcis Fernandez-Fuentes; Baldo Oliva (BMC Bioinform., 2021)

Prediction of Adverse Drug Reaction Linked to Protein Targets Using Network-Based Information and Machine Learning. - Cristiano Galletti; Joaquim Aguirre-Plans; Baldo Oliva; Narcis Fernandez-Fuentes (Frontiers Bioinform., 2022)

SBILib: a handle for protein modeling and engineering. - Patrick Gohl; Jaume Bonet; Oriol Fornes; Joan Planas-Iglesias; Narcis Fernandez-Fuentes; Baldo Oliva (Bioinform., 2023)