Emergence of Recombinant Forms of HIV: Dynamics and Scaling. - Gajendra W. Suryavanshi; Narendra M. Dixit (PLoS Comput. Biol., 2007)

Timing the Emergence of Resistance to Anti-HIV Drugs with Large Genetic Barriers. - Pankhuri Arora; Narendra M. Dixit (PLoS Comput. Biol., 2009)

Ribavirin-Induced Anemia in Hepatitis C Virus Patients Undergoing Combination Therapy. - Sheeja M. Krishnan; Narendra M. Dixit (PLoS Comput. Biol., 2011)

Mathematical Model of Viral Kinetics In Vitro Estimates the Number of E2-CD81 Complexes Necessary for Hepatitis C Virus Entry. - Pranesh Padmanabhan; Narendra M. Dixit (PLoS Comput. Biol., 2011)

A Finite Population Model of Molecular Evolution: Theory and Computation. - Narendra M. Dixit; Piyush Srivastava 001; Nisheeth K. Vishnoi (J. Comput. Biol., 2012)

Stochastic Simulations Suggest that HIV-1 Survives Close to Its Error Threshold. - Kushal Tripathi; Rajesh Balagam; Nisheeth K. Vishnoi; Narendra M. Dixit (PLoS Comput. Biol., 2012)

Trade-off between synergy and efficacy in combinations of HIV-1 latency-reversing agents. - Vipul Gupta; Narendra M. Dixit (PLoS Comput. Biol., 2018)

Modelling how responsiveness to interferon improves interferon-free treatment of hepatitis C virus infection. - Vishnu Venugopal; Pranesh Padmanabhan; Rubesh Raja; Narendra M. Dixit (PLoS Comput. Biol., 2018)

City-Scale Agent-Based Simulators for the Study of Non-Pharmaceutical Interventions in the Context of the COVID-19 Epidemic. - Shubhada Agrawal; Siddharth Bhandari; Anirban Bhattacharjee; Anand Deo; Narendra M. Dixit; Prahladh Harsha; Sandeep Juneja 001; Poonam Kesarwani; Aditya Krishna Swamy; Preetam Patil; Nihesh Rathod; Ramprasad Saptharishi; et al. (CoRR, 2020)

Early exposure to broadly neutralizing antibodies may trigger a dynamical switch from progressive disease to lasting control of SHIV infection. - Rajat Desikan; Rubesh Raja; Narendra M. Dixit (PLoS Comput. Biol., 2020)

Targeting TMPRSS2 and Cathepsin B/L together may be synergistic against SARS-CoV-2 infection. - Pranesh Padmanabhan; Rajat Desikan; Narendra M. Dixit (PLoS Comput. Biol., 2020)

Pre-existing resistance in the latent reservoir can compromise VRC01 therapy during chronic HIV-1 infection. - Ananya Saha; Narendra M. Dixit (PLoS Comput. Biol., 2020)

Concerted Interactions between Multiple gp41 Trimers and the Target Cell Lipidome May Be Required for HIV-1 Entry. - Biswajit Gorai; Anil Kumar Sahoo; Anand Srivastava; Narendra M. Dixit; Prabal K. Maiti (J. Chem. Inf. Model., 2021)

An efficient and scalable top-down method for predicting structures of microbial communities. - Aamir Faisal Ansari; Yugandhar B. S. Reddy; Janhavi Raut; Narendra M. Dixit (Nat. Comput. Sci., 2021)

Modeling how antibody responses may determine the efficacy of COVID-19 vaccines. - Pranesh Padmanabhan; Rajat Desikan; Narendra M. Dixit (Nat. Comput. Sci., 2022)

Antiviral capacity of the early CD8 T-cell response is predictive of natural control of SIV infection: Learning in vivo dynamics using ex vivo data. - Bharadwaj Vemparala; Vincent Madelain; Caroline Passaes; Antoine Millet; Véronique Avettand-Fenoel; Ramsès Djidjou-Demasse; Nathalie Dereuddre-Bosquet; Roger Le Grand; Christine Rouzioux; Bruno Vaslin; Asier Sáez-Cirión; Jérémie Guedj; et al. (PLoS Comput. Biol., 2024)

Leveraging large language models for pandemic preparedness. - Narendra M. Dixit (Nat. Comput. Sci., 2025)