YAMATO and ASUKA: DNA database management system. - Hajime Kitakami; Tadasu Shin-I; Kazuho Ikeo; Yoshihiro Ugawa; Naruya Saitou; Takashi Gojobori; Yoshio Tateno (HICSS (5), 1995)

DNA Data Bank of Japan (DDBJ) for genome scale research in life science. - Yoshio Tateno; Tadashi Imanishi; Satoru Miyazaki; Kaoru Fukami-Kobayashi; Naruya Saitou; Hideaki Sugawara; Takashi Gojobori (Nucleic Acids Res., 2002)

DDBJ in collaboration with mass-sequencing teams on annotation. - Yoshio Tateno; Naruya Saitou; Kousaku Okubo; Hideaki Sugawara; Takashi Gojobori (Nucleic Acids Res., 2005)

Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees. - Akihiro Matsuya; Ryuichi Sakate; Yoshihiro Kawahara; Kanako O. Koyanagi; Yoshiharu Sato; Yasuyuki Fujii; Chisato Yamasaki; Takuya Habara; Hajime Nakaoka; Fusano Todokoro; Kaori Yamaguchi; Toshinori Endo; et al. (Nucleic Acids Res., 2008)

MISHIMA - a new method for high speed multiple alignment of nucleotide sequences of bacterial genome scale data. - Kirill Kryukov; Naruya Saitou (BMC Bioinform., 2010)

Introduction to Evolutionary Genomics - Naruya Saitou (Springer, 2013)