GeneRanger and TargetRanger: processed gene and protein expression levels across cells and tissues for target discovery. - Giacomo B. Marino; Michael Ngai; Daniel J. B. Clarke; Reid H. Fleishman; Eden Z. Deng; Zhuorui Xie; Nasheath Ahmed; Avi Ma'ayan (Nucleic Acids Res., 2023)

Playbook workflow builder: Interactive construction of bioinformatics workflows. - Daniel J. B. Clarke; John Erol Evangelista; Zhuorui Xie; Giacomo B. Marino; Anna I. Byrd; Mano Ram Maurya; Sumana Srinivasan; Keyang Yu; Varduhi Petrosyan; Matthew E. Roth; Miroslav Milinkov; Charles Hadley King; et al. (PLoS Comput. Biol., 2025)