The metabolic pathway collection: an update. - Evgeni Selkov; Miliusha Galimova; Igor Goryanin; Yuri Grechkin; Natalia Ivanova; Yuri Komarov; Natalia Maltsev; Natalia Mikhailova; Valeri Nenashev; Ross A. Overbeek; Elena Panyushkina; Lyudmila Pronevitch; et al. (Nucleic Acids Res., 1997)

The ERGOTM genome analysis and discovery system. - Ross A. Overbeek; Niels Larsen; Theresa Walunas; Mark D'Souza; Gordon D. Pusch; Evgeni Selkov Jr.; Konstantinos Liolios; Viktor Joukov; Denis Kaznadzey; Iain Anderson; Anamitra Bhattacharyya; Henry Burd; et al. (Nucleic Acids Res., 2003)

The Integrated Microbial Genomes (IMG) System: A Case Study in Biological Data Management. - Victor M. Markowitz; Frank Korzeniewski; Krishna Palaniappan; Ernest Szeto; Natalia Ivanova; Nikos Kyrpides (VLDB, 2005)

An experimental metagenome data management and analysis system. - Victor M. Markowitz; Natalia Ivanova; Krishna Palaniappan; Ernest Szeto; Frank Korzeniewski; Athanasios Lykidis; Iain Anderson; Konstantinos Mavrommatis; Victor Kunin; Héctor García Martín; Inna Dubchak; Philip Hugenholtz; et al. (ISMB (Supplement of Bioinformatics), 2006)

The integrated microbial genomes (IMG) system. - Victor M. Markowitz; Frank Korzeniewski; Krishna Palaniappan; Ernest Szeto; Greg Werner; Anu Padki; Xueling Zhao; Inna Dubchak; Philip Hugenholtz; Iain Anderson; Athanasios Lykidis; Konstantinos Mavrommatis; et al. (Nucleic Acids Res., 2006)

Annotation of metagenome short reads using proxygenes. - Daniel Dalevi; Natalia Ivanova; Konstantinos Mavrommatis; Sean D. Hooper; Ernest Szeto; Philip Hugenholtz; Nikos Kyrpides; Victor M. Markowitz (ECCB, 2008)

IMG/M: a data management and analysis system for metagenomes. - Victor M. Markowitz; Natalia Ivanova; Ernest Szeto; Krishna Palaniappan; Ken Chu; Daniel Dalevi; I-Min A. Chen; Yuri Grechkin; Inna Dubchak; Iain Anderson; Athanasios Lykidis; Konstantinos Mavrommatis; et al. (Nucleic Acids Res., 2008)

The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions. - Victor M. Markowitz; Ernest Szeto; Krishna Palaniappan; Yuri Grechkin; Ken Chu; I-Min A. Chen; Inna Dubchak; Iain Anderson; Athanasios Lykidis; Konstantinos Mavrommatis; Natalia Ivanova; Nikos Kyrpides (Nucleic Acids Res., 2008)

IMG ER: a system for microbial genome annotation expert review and curation. - Victor M. Markowitz; Konstantinos Mavrommatis; Natalia Ivanova; I-Min A. Chen; Ken Chu; Nikos Kyrpides (Bioinform., 2009)

Estimating DNA coverage and abundance in metagenomes using a gamma approximation. - Sean D. Hooper; Daniel Dalevi; Amrita Pati; Konstantinos Mavrommatis; Natalia Ivanova; Nikos Kyrpides (Bioinform., 2010)

The integrated microbial genomes system: an expanding comparative analysis resource. - Victor M. Markowitz; I-Min A. Chen; Krishna Palaniappan; Ken Chu; Ernest Szeto; Yuri Grechkin; Anna Ratner; Iain Anderson; Athanasios Lykidis; Konstantinos Mavrommatis; Natalia Ivanova; Nikos Kyrpides (Nucleic Acids Res., 2010)

IMG/M: the integrated metagenome data management and comparative analysis system. - Victor M. Markowitz; I-Min A. Chen; Ken Chu; Ernest Szeto; Krishna Palaniappan; Yuri Grechkin; Anna Ratner; Biju Jacob; Amrita Pati; Marcel Huntemann; Konstantinos Liolios; Ioanna Pagani; et al. (Nucleic Acids Res., 2012)

IMG: the integrated microbial genomes database and comparative analysis system. - Victor M. Markowitz; I-Min A. Chen; Krishna Palaniappan; Ken Chu; Ernest Szeto; Yuri Grechkin; Anna Ratner; Biju Jacob; Jinghua Huang; Peter Williams; Marcel Huntemann; Iain Anderson; et al. (Nucleic Acids Res., 2012)

Response of passive microwave sea ice concentration algorithms to thin ice. - Georg C. Heygster; Marcus Huntemann; Natalia Ivanova; Roberto Saldo; Leif Toudal Pedersen (IGARSS, 2014)

IMG/M 4 version of the integrated metagenome comparative analysis system. - Victor M. Markowitz; I-Min A. Chen; Ken Chu; Ernest Szeto; Krishna Palaniappan; Manoj Pillay; Anna Ratner; Jinghua Huang; Ioanna Pagani; Susannah Tringe; Marcel Huntemann; Konstantinos Billis; et al. (Nucleic Acids Res., 2014)

IMG 4 version of the integrated microbial genomes comparative analysis system. - Victor M. Markowitz; I-Min A. Chen; Krishna Palaniappan; Ken Chu; Ernest Szeto; Manoj Pillay; Anna Ratner; Jinghua Huang; Tanja Woyke; Marcel Huntemann; Iain Anderson; Konstantinos Billis; et al. (Nucleic Acids Res., 2014)

Retrieval of Arctic Sea Ice Parameters by Satellite Passive Microwave Sensors: A Comparison of Eleven Sea Ice Concentration Algorithms. - Natalia Ivanova; Ola M. Johannessen; Leif Toudal Pedersen; Rasmus T. Tonboe (IEEE Trans. Geosci. Remote. Sens., 2014)

IMG/M: integrated genome and metagenome comparative data analysis system. - I-Min A. Chen; Victor M. Markowitz; Ken Chu; Krishna Palaniappan; Ernest Szeto; Manoj Pillay; Anna Ratner; Jinghua Huang; Evan Andersen; Marcel Huntemann; Neha Varghese; Michalis Hadjithomas; et al. (Nucleic Acids Res., 2017)

IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes. - Michalis Hadjithomas; I-Min A. Chen; Ken Chu; Jinghua Huang; Anna Ratner; Krishna Palaniappan; Evan Andersen; Victor M. Markowitz; Nikos Kyrpides; Natalia Ivanova (Nucleic Acids Res., 2017)

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses. - David Páez-Espino; I-Min A. Chen; Krishna Palaniappan; Anna Ratner; Ken Chu; Ernest Szeto; Manoj Pillay; Jinghua Huang; Victor M. Markowitz; Torben Nielsen; Marcel Huntemann; T. B. K. Reddy; et al. (Nucleic Acids Res., 2017)

IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes. - I-Min A. Chen; Ken Chu; Krishna Palaniappan; Manoj Pillay; Anna Ratner; Jinghua Huang; Marcel Huntemann; Neha Varghese; James R. White; Rekha Seshadri; Tatyana Smirnova; Edward Kirton; et al. (Nucleic Acids Res., 2019)

IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes. - David Páez-Espino; Simon Roux; I-Min A. Chen; Krishna Palaniappan; Anna Ratner; Ken Chu; Marcel Huntemann; T. B. K. Reddy; Joan Carles Pons; Mercè Llabrés; Emiley A. Eloe-Fadrosh; Natalia N. Ivanova; et al. (Nucleic Acids Res., 2019)

Modelling of flexible manufacturing systems. - Sergey Egorov; Alexey Kapitanov; Vladimir Mitrofanov; Leonid Shvartsburg; Natalia Ivanova; Sergey Ryabov (Int. J. Manuf. Technol. Manag., 2020)

IMG-ABC v.5.0: an update to the IMG/Atlas of Biosynthetic Gene Clusters Knowledgebase. - Krishnaveni Palaniappan; I-Min A. Chen; Ken Chu; Anna Ratner; Rekha Seshadri; Nikos Kyrpides; Natalia N. Ivanova; Nigel J. Mouncey (Nucleic Acids Res., 2020)

Kinetic calculation: Software tool for determining the kinetic parameters of the thermal decomposition process using the Vyazovkin Method. - Dmitry Drozin; Sergey Sozykin; Natalia Ivanova; Tatiana Olenchikova; Tatyana G. Krupnova; Natalia Krupina; Viacheslav Avdin (SoftwareX, 2020)

VPF-Class: taxonomic assignment and host prediction of uncultivated viruses based on viral protein families. - Joan Carles Pons; David Páez-Espino; Gabriel Riera; Natalia Ivanova; Nikos Kyrpides; Mercè Llabrés (Bioinform., 2021)

The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities. - I-Min A. Chen; Ken Chu; Krishnaveni Palaniappan; Anna Ratner; Jinghua Huang; Marcel Huntemann; Patrick Hajek; Stephan Ritter; Neha Varghese; Rekha Seshadri; Simon Roux; Tanja Woyke; et al. (Nucleic Acids Res., 2021)

IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses. - Simon Roux; David Páez-Espino; I-Min A. Chen; Krishna Palaniappan; Anna Ratner; Ken Chu; T. B. K. Reddy; Stephen Nayfach; Frederik Schulz; Lee Call; Russell Y. Neches; Tanja Woyke; et al. (Nucleic Acids Res., 2021)

IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata. - Antonio Pedro Camargo; Stephen Nayfach; I-Min A. Chen; Krishnaveni Palaniappan; Anna Ratner; Ken Chu; Stephan Ritter; T. B. K. Reddy; Supratim Mukherjee; Frederik Schulz; Lee Call; Russell Y. Neches; et al. (Nucleic Acids Res., 2023)

The IMG/M data management and analysis system v.7: content updates and new features. - I-Min A. Chen; Ken Chu; Krishnaveni Palaniappan; Anna Ratner; Jinghua Huang; Marcel Huntemann; Patrick Hajek; Stephan Ritter; Cody Webb; Dongying Wu; Neha Varghese; T. B. K. Reddy; et al. (Nucleic Acids Res., 2023)

Inferring Metabolic States from Single Cell Transcriptomic Data via Geometric Deep Learning. - Holly R. Steach; Siddharth Viswanath; Yixuan He; Xitong Zhang; Natalia Ivanova; Matthew J. Hirn; Michael Perlmutter; Smita Krishnaswamy (RECOMB, 2024)

Infrared thermography for precise measurement of coverage area of plant leaves with pesticide surfactant formulations. - Natalia Ivanova; Denis Klyuev (Comput. Electron. Agric., 2025)