Operon Prediction in Cyanobacteria using Comparative Genomics. - Natalia Khuri; Nikhila S. Rao (CSB Workshops, 2005)

ModBase, a database of annotated comparative protein structure models and associated resources. - Ursula Pieper 001; Benjamin M. Webb; Guang Qiang Dong; Dina Schneidman-Duhovny; Hao Fan 002; Seung Joong Kim; Natalia Khuri; Yannick G. Spill; Patrick Weinkam; Michal Hammel; John A. Tainer; Michael Nilges; et al. (Nucleic Acids Res., 2014)

Twitter opinion mining for adverse drug reactions. - Liang Wu; Teng-Sheng Moh; Natalia Khuri (IEEE BigData, 2015)

Increasing the Capacity of STEM Workforce: Minor in Bioinformatics. - Sami Khuri; Miri VanHoven; Natalia Khuri (SIGCSE, 2017)

Computational Discovery and Experimental Validation of Inhibitors of the Human Intestinal Transporter OATP2B1. - Natalia Khuri; Arik A. Zur; Matthias B. Wittwer; Lawrence Lin; Sook Wah Yee; Andrej Sali; Kathleen M. Giacomini (J. Chem. Inf. Model., 2017)

PediatricDB: Data Analytics Platform for Pediatric Healthcare. - Shantanu Deshmukh; Natalia Khuri (ICDIM, 2018)

Creating Digital Collages Inspired by English Texts. - Vandana Kannan; Natalia Khuri (ICDIM, 2018)

Machine Learning for Classification of Inhibitors of Hepatic Drug Transporters. - Natalia Khuri; Shantanu Deshmukh (ICMLA, 2018)

A Long-Short Term Memory Network for Detecting CRISPR Arrays. - Shantanu Deshmukh; Philip Heller; Natalia Khuri (ICMLA, 2019)

Mining environmental chemicals with boosted trees. - Natalia Khuri (SAC, 2020)

Interdisciplinary Minor in Bioinformatics: First Results and Outlook. - Natalia Khuri; Wendy Lee; K. Virginia Lehmkuhl-Dakhwe; Miri VanHoven; Sami Khuri (SIGCSE, 2020)

A value-based approach for training of classifiers with high-throughput small molecule screening data. - Natalia Khuri; Sarah Parsons (BCB, 2021)

Mining Biomedical Texts for Pediatric Information. - Tian Yun 001; Deepti Garg; Natalia Khuri (BIOINFORMATICS, 2021)

A Game-Theoretical Approach for Data Acquisition From Fitness Tracking Devices. - Natalia Khuri; Esteban Murillo Burford; Sarah Parsons; Chenqi Xu (ISNCC, 2021)

Using game theory to guide the classification of inhibitors of human iodide transporters. - Natalia Khuri; Anish Prasanna (SAC, 2021)

Classification of drug prescribing information using long short-term memory networks. - Tianen Liu; Natalia Khuri (SAC, 2021)

Multi-target integration and annotation of single-cell RNA-sequencing data. - Sapan Bhandari; Nathan P. Whitener; Konghao Zhao; Natalia Khuri (BCB, 2022)

An evolutionary approach to data valuation. - Natalia Khuri; Sapan Bhandari; Esteban Murillo Burford; Nathan P. Whitener; Konghao Zhao (BCB, 2022)

Generative Adversarial Network for the Segmentation of Ground Glass Opacities and Consolidations from Lung CT Images. - Xiaochen Wang; Natalia Khuri (BIOINFORMATICS, 2022)

Interpretable Hierarchical Bayesian Modeling of Cell-Type Distributions in COVID-19 Disease. - Sarah Parsons; Nathan P. Whitener; Sapan Bhandari; Natalia Khuri (CISS, 2022)

An Ensemble Machine Learning Approach for Benchmarking and Selection of scRNA-seq Integration Methods. - Konghao Zhao; Sapan Bhandari; Nathan P. Whitener; Jason M. Grayson; Natalia Khuri (BCB, 2023)