Assigning Function to CDS Through Qualified Query Answering: Beyond Alignment and Motifs. - Terry Gaasterland; Natalia Maltsev; Jorge Lobo 001; Guo-Hua Chen (ISMB, 1994)

The metabolic pathway collection from EMP: the enzymes and metabolic pathways database. - Evgeni Selkov; Svetlana Basmanova; Terry Gaasterland; Igor Goryanin; Yuri Grechkin; Natalia Maltsev; Valeri Nenashev; Ross A. Overbeek; Elena Panyushkina; Lyudmila Pronevitch; Evgeni Selkov Jr.; Ilya Yunus (Nucleic Acids Res., 1996)

The metabolic pathway collection: an update. - Evgeni Selkov; Miliusha Galimova; Igor Goryanin; Yuri Grechkin; Natalia Ivanova; Yuri Komarov; Natalia Maltsev; Natalia Mikhailova; Valeri Nenashev; Ross A. Overbeek; Elena Panyushkina; Lyudmila Pronevitch; et al. (Nucleic Acids Res., 1997)

Use of contiguity on the chromosome to predict functional coupling. - Ross A. Overbeek; Michael Fonstein; Mark D'Souza; Gordon D. Pusch; Natalia Maltsev (Silico Biol., 1998)

SENTRA, a database of signal transduction proteins. - Mark D'Souza; Margaret F. Romine; Natalia Maltsev (Nucleic Acids Res., 2000)

WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction. - Ross A. Overbeek; Niels Larsen; Gordon D. Pusch; Mark D'Souza; Evgeni Selkov Jr.; Nikos Kyrpides; Michael Fonstein; Natalia Maltsev; Evgeni Selkov (Nucleic Acids Res., 2000)

Sentra, a database of signal transduction proteins. - Natalia Maltsev; Elizabeth Marland; Gong-Xin Yu; Saurabha Bhatnagar; Richard W. Lusk (Nucleic Acids Res., 2002)

The Grid2003 Production Grid: Principles and Practice. - Ian T. Foster; Jerry Gieraltowski; Scott Gose; Natalia Maltsev; Edward N. May; Alex A. Rodriguez; Dinanath Sulakhe; A. Vaniachine; Jim Shank; Saul Youssef; David Adams; Richard Baker 003; et al. (HPDC, 2004)

GNARE: an environment for grid-based high-throughput genome analysis. - Dinanath Sulakhe; Alex A. Rodriguez; Mark D'Souza; Michael Wilde; Veronika Nefedova; Ian T. Foster; Natalia Maltsev (CCGRID, 2005)

Using Multiple Grid Resources for Bioinformatics Applications in GADU. - Dinanath Sulakhe; Alex A. Rodriguez; Michael Wilde; Ian T. Foster; Natalia Maltsev (CCGRID, 2006)

Using Term Lists and Inverted Files to Improve Search Speed for Metabolic Pathway Databases. - Greeshma Neglur; Robert L. Grossman; Natalia Maltsev; Clement T. Yu (DILS, 2006)

PUMA2 - grid-based high-throughput analysis of genomes and metabolic pathways. - Natalia Maltsev; Elizabeth M. Glass; Dinanath Sulakhe; Alexis A. Rodriguez; Mustafa H. Syed; Tanuja Bompada; Yi Zhang 002; Mark D'Souza (Nucleic Acids Res., 2006)

Evolutionary analysis of enzymes using Chisel. - Alexis A. Rodriguez; Tanuja Bompada; Mustafa H. Syed; Parantu K. Shah; Natalia Maltsev (Bioinform., 2007)

Sentra: a database of signal transduction proteins for comparative genome analysis. - Mark D'Souza; Elizabeth M. Glass; Mustafa H. Syed; Yi Zhang 002; Alexis A. Rodriguez; Natalia Maltsev; Michael Y. Galperin (Nucleic Acids Res., 2007)

Interoperability of GADU in Using Heterogeneous Grid Resources for Bioinformatics Applications. - Dinanath Sulakhe; Alex A. Rodriguez; Michael Wilde; Ian T. Foster; Natalia Maltsev (IEEE Trans. Inf. Technol. Biomed., 2008)

Prediction of candidate genes for neuropsychiatric disorders using feature-based enrichment. - Bingqing Xie; Gady Agam; Dinanath Sulakhe; Natalia Maltsev; Bhadrachalam Chitturi; T. Conrad Gilliam (BCB, 2012)

Conditional Random Field for Candidate Gene Prioritization. - Bingqing Xie; Gady Agam; Natalia Maltsev; T. Conrad Gilliam (BCB, 2013)

Lynx: a database and knowledge extraction engine for integrative medicine. - Dinanath Sulakhe; Sandhya Balasubramanian; Bingqing Xie; Bo Feng; Andrew Taylor; Sheng Wang 001; Eduardo Berrocal; Utpal J. Dave; Jinbo Xu; Daniela Börnigen; T. Conrad Gilliam; Natalia Maltsev (Nucleic Acids Res., 2014)

Lynx web services for annotations and systems analysis of multi-gene disorders. - Dinanath Sulakhe; Andrew Taylor; Sandhya Balasubramanian; Bo Feng; Bingqing Xie; Daniela Börnigen; Utpal J. Dave; Ian T. Foster; T. Conrad Gilliam; Natalia Maltsev (Nucleic Acids Res., 2014)

Disease Gene Prioritization Using Network and Feature. - Bingqing Xie; Gady Agam; Sandhya Balasubramanian; Jinbo Xu; T. Conrad Gilliam; Natalia Maltsev; Daniela Börnigen (J. Comput. Biol., 2015)

Lynx: a knowledge base and an analytical workbench for integrative medicine. - Dinanath Sulakhe; Bingqing Xie; Andrew Taylor; Mark D'Souza; Sandhya Balasubramanian; Somaye Hashemifar; Steven White; Utpal J. Dave; Gady Agam; Jinbo Xu; Sheng Wang 001; T. Conrad Gilliam; et al. (Nucleic Acids Res., 2016)

Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources. - Dinanath Sulakhe; Mark D'Souza; Sheng Wang 001; Sandhya Balasubramanian; Prashanth Athri; Bingqing Xie; Stefan Canzar; Gady Agam; T. Conrad Gilliam; Natalia Maltsev (Briefings Bioinform., 2019)