Conflict Resolution Algorithms for Deep Coalescence Phylogenetic Networks. - Marcin Wawerka; Dawid Dabkowski; Natalia Rutecka; Agnieszka Mykowiecka 002; Pawel Górecki 001 (WABI, 2021)

Rooting Gene Trees via Phylogenetic Networks. - Jerzy Tiuryn; Natalia Rutecka; Pawel Górecki 001 (COCOON, 2022)

Embedding gene trees into phylogenetic networks by conflict resolution algorithms. - Marcin Wawerka; Dawid Dabkowski; Natalia Rutecka; Agnieszka Mykowiecka 002; Pawel Górecki 001 (Algorithms Mol. Biol., 2022)

Simultaneous Reconstruction of Duplication Episodes and Gene-Species Mappings. - Pawel Górecki 001; Natalia Rutecka; Agnieszka Mykowiecka 002; Jaroslaw Paszek (WABI, 2023)

Robinson-Foulds distance between phylogenetic networks and gene trees. - Natalia Rutecka; Agnieszka Mykowiecka 002; Jaroslaw Paszek; Pawel Górecki 001 (BCB, 2024)

Phylogenetic network-assisted rooting of unrooted gene trees. - Jerzy Tiuryn; Natalia Rutecka; Pawel Górecki 001 (J. Comb. Optim., 2024)

Unifying duplication episode clustering and gene-species mapping inference. - Pawel Górecki 001; Natalia Rutecka; Agnieszka Mykowiecka 002; Jaroslaw Paszek (Algorithms Mol. Biol., 2024)