Quantifying the similarity of topological domains across normal and cancer human cell types. - Natalie Sauerwald; Carl Kingsford (Bioinform., 2018)

Topological Data Analysis Reveals Principles of Chromosome Structure in Cellular Differentiation. - Natalie Sauerwald; Yihang Shen; Carl Kingsford (WABI, 2019)

dNEMO: a tool for quantification of mRNA and punctate structures in time-lapse images of single cells. - Gabriel J. Kowalczyk; J. Agustin Cruz; Yue Guo; Qiuhong Zhang; Natalie Sauerwald; Robin E. C. Lee (Bioinform., 2021)