Protein Structure Comparison Based on Fold Evolution. - Natalja Kurbatova; Laura Mancinska; Juris Viksna (German Conference on Bioinformatics, 2007)

Exploration of Evolutionary Relations between Protein Structures. - Natalja Kurbatova; Juris Viksna (BIRD, 2008)

Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites. - Rafael Najmanovich; Natalja Kurbatova; Janet M. Thornton (ECCB, 2008)

A System for Information Management in BioMedical Studies - SIMBioMS. - Maria Krestyaninova; Andris Zarins; Juris Viksna; Natalja Kurbatova; Peteris Rucevskis; Sudeshna Guha Neogi; Mike Gostev; Teemu Perheentupa; Juha Knuuttila; Amy Barrett; Ilkka Lappalainen; Johan Rung; et al. (Bioinform., 2009)

ontoCAT: an R package for ontology traversal and search. - Natalja Kurbatova; Tomasz Adamusiak; Pavel Kurnosov; Morris A. Swertz; Misha Kapushesky (Bioinform., 2011)

OntoCAT - simple ontology search and integration in Java, R and REST/JavaScript. - Tomasz Adamusiak; Tony Burdett; Natalja Kurbatova; K. Joeri van der Velde; Niran Abeygunawardena; Despoina Antonakaki; Misha Kapushesky; Helen E. Parkinson; Morris A. Swertz (BMC Bioinform., 2011)

ArrayExpress update - an archive of microarray and high-throughput sequencing-based functional genomics experiments. - Helen E. Parkinson; Ugis Sarkans; Nikolay Kolesnikov; Niran Abeygunawardena; Tony Burdett; Miroslaw Dylag; Ibrahim Emam; Anna Farne; Emma Hastings; Ele Holloway; Natalja Kurbatova; Margus Lukk; et al. (Nucleic Acids Res., 2011)

graph2tab, a library to convert experimental workflow graphs into tabular formats. - Marco Brandizi; Natalja Kurbatova; Ugis Sarkans; Philippe Rocca-Serra (Bioinform., 2012)

Gene Expression Atlas update - a value-added database of microarray and sequencing-based functional genomics experiments. - Misha Kapushesky; Tomasz Adamusiak; Tony Burdett; Aedín C. Culhane; Anna Farne; Alexey Filippov; Ele Holloway; Andrey Klebanov; Nataliya Kryvych; Natalja Kurbatova; Pavel Kurnosov; James Malone; et al. (Nucleic Acids Res., 2012)

ArrayExpress update - trends in database growth and links to data analysis tools. - Gabriella Rustici; Nikolay Kolesnikov; Marco Brandizi; Tony Burdett; Miroslaw Dylag; Ibrahim Emam; Anna Farne; Emma Hastings; Jon C. Ison; Maria Keays; Natalja Kurbatova; James Malone; et al. (Nucleic Acids Res., 2013)

The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. - Gautier Koscielny; Gagarine Yaikhom; Vivek Iyer; Terrence F. Meehan; Hugh Morgan; Julian Atienza-Herrero; Andrew Blake 003; Chao-Kung Chen; Richard Easty; Armida Di Fenza; Tanja Fiegel; Mark Grifiths; et al. (Nucleic Acids Res., 2014)

ArrayExpress update - simplifying data submissions. - Nikolay Kolesnikov; Emma Hastings; Maria Keays; Olga Melnichuk; Y. Amy Tang; Eleanor Williams; Miroslaw Dylag; Natalja Kurbatova; Marco Brandizi; Tony Burdett; Karyn Megy; Ekaterina Pilicheva; et al. (Nucleic Acids Res., 2015)

Disease ontologies for knowledge graphs. - Natalja Kurbatova; Rowan Swiers (BMC Bioinform., 2021)

Good machine learning practices: Learnings from the modern pharmaceutical discovery enterprise. - Vladimir Makarov; Christophe Chabbert; Elina Koletou; Fotis E. Psomopoulos; Natalja Kurbatova; Samuel A. Ramirez; Chas Nelson; Prashant Natarajan; Bikalpa Neupane (Comput. Biol. Medicine, 2024)

Open-Source Approach to GPU-Accelerated Substructure Search. - Andrew J. Whitehouse; Melchor Sanchez-Martinez; Seyedeh Maryam Salehi; Natalja Kurbatova; Euan Dean (J. Chem. Inf. Model., 2024)