Trend of Amino Acid Composition of Proteins of Different Taxa. - Natalya S. Bogatyreva; Alexei V. Finkelstein; Oxana V. Galzitskaya (J. Bioinform. Comput. Biol., 2006)

Prediction of Loop Regions in protein Sequence. - Nikita V. Dovidchenko; Natalya S. Bogatyreva; Oxana V. Galzitskaya (J. Bioinform. Comput. Biol., 2008)

Many-Atom van der Waals Interactions lead to Direction-Sensitive Interactions of covalent bonds. - Alexei V. Finkelstein; Michael Y. Lobanov; Nikita V. Dovidchenko; Natalya S. Bogatyreva (J. Bioinform. Comput. Biol., 2008)

Compactness Determines protein Folding Type. - Oxana V. Galzitskaya; Natalya S. Bogatyreva; Dmitry N. Ivankov (J. Bioinform. Comput. Biol., 2008)

KineticDB: a database of protein folding kinetics. - Natalya S. Bogatyreva; Alexander A. Osypov; Dmitry N. Ivankov (Nucleic Acids Res., 2009)

Library of Disordered Patterns in 3D Protein Structures. - Michail Yu. Lobanov; Eugenia Furletova; Natalya S. Bogatyreva; Mikhail A. Roytberg; Oxana V. Galzitskaya (PLoS Comput. Biol., 2010)

QARIP: a web server for quantitative proteomic analysis of regulated intramembrane proteolysis. - Dmitry N. Ivankov; Natalya S. Bogatyreva; Peter Hönigschmid; Bastian Dislich; Sebastian Hogl; Peer-Hendrik Kuhn; Dmitrij Frishman; Stefan F. Lichtenthaler (Nucleic Acids Res., 2013)

Local fitness landscape of the green fluorescent protein. - Karen S. Sarkisyan; Dmitry Bolotin; Margarita V. Meer; Dinara R. Usmanova; Alexander S. Mishin; George V. Sharonov; Dmitry N. Ivankov; Nina G. Bozhanova; Mikhail S. Baranov; Onuralp Soylemez; Natalya S. Bogatyreva; Peter K. Vlasov; et al. (Nat., 2016)

Self-consistency test reveals systematic bias in programs for prediction change of stability upon mutation. - Dinara R. Usmanova; Natalya S. Bogatyreva; Joan Ariño Bernad; Aleksandra A. Eremina; Anastasiya A. Gorshkova; German M. Kanevskiy; Lyubov R. Lonishin; Alexander V. Meister; Alisa G. Yakupova; Fyodor A. Kondrashov; Dmitry N. Ivankov (Bioinform., 2018)

HypercubeME: two hundred million combinatorially complete datasets from a single experiment. - Laura A. Esteban; Lyubov R. Lonishin; Daniil M. Bobrovskiy; Gregory Leleytner; Natalya S. Bogatyreva; Fyodor A. Kondrashov; Dmitry N. Ivankov (Bioinform., 2020)