Dead-Block Elimination in Cache: A Mechanism to Reduce I-cache Power Consumption in High Performance Microprocessors. - Mohan G. Kabadi; Natarajan Kannan; Palanidaran Chidambaram; Suriya Narayanan; M. Subramanian; Ranjani Parthasarathi (HiPC, 2002)

Live URLs: breathing life into URLs. - Natarajan Kannan; Toufeeq Hussain (WWW, 2006)

ProKinO: A Framework for Protein Kinase Ontology. - Gurinder Pal Singh Gosal; Natarajan Kannan; Krys J. Kochut (BIBM, 2011)

Prediction and Prioritization of Rare Oncogenic Mutations in the Cancer Kinome Using Novel Features and Multiple Classifiers. - Man Chon U; Eric Talevich; Samiksha Katiyar; Khaled Rasheed; Natarajan Kannan (PLoS Comput. Biol., 2014)

Creating Biomedical Ontologies Using mOntage. - Shima Dastgheib; Daniel Ian McSkimming; Natarajan Kannan; Krys J. Kochut (DILS, 2015)

SPARQLing: A Graphical Interface for SPARQL. - Shima Dastgheib; Daniel Ian McSkimming; Kannan Natarajan; Krys J. Kochut (ISWC (Posters & Demos), 2015)

Unsupervised feature based key-frame extraction towards face recognition. - Jana Selvaganesan; Kannan Natarajan (Int. Arab J. Inf. Technol., 2016)

Classifying kinase conformations using a machine learning approach. - Daniel Ian McSkimming; Khaled Rasheed; Natarajan Kannan (BMC Bioinform., 2017)

Quantitative Structure-Mutation-Activity Relationship Tests (QSMART) model for protein kinase inhibitor response prediction. - Liang-Chin Huang; Wayland Yeung; Ye Wang; Huimin Cheng; Aarya Venkat; Sheng Li 001; Ping Ma; Khaled Rasheed; Natarajan Kannan (BMC Bioinform., 2020)

PDBe-KB: a community-driven resource for structural and functional annotations. - Mihaly Varadi; John M. Berrisford; Mandar S. Deshpande; Sreenath Nair; Aleksandras Gutmanas; David R. Armstrong; Lukás Pravda; Bissan Al-Lazikani; Stephen Anyango; Geoffrey J. Barton; Karel Berka; Tom L. Blundell; et al. (Nucleic Acids Res., 2020)

KinOrtho: a method for mapping human kinase orthologs across the tree of life and illuminating understudied kinases. - Liang-Chin Huang; Rahil Taujale; Nathan Gravel; Aarya Venkat; Wayland Yeung; Dominic P. Byrne; Patrick A. Eyers; Natarajan Kannan (BMC Bioinform., 2021)

PDBe-KB: collaboratively defining the biological context of structural data. - Mihaly Varadi; Stephen Anyango; David R. Armstrong; John M. Berrisford; Preeti Choudhary; Mandar S. Deshpande; Nurul Nadzirin; Sreenath Nair; Lukás Pravda; Ahsan Tanweer; Bissan Al-Lazikani; Claudia Andreini; et al. (Nucleic Acids Res., 2022)

XAI meets Biology: A Comprehensive Review of Explainable AI in Bioinformatics Applications. - Zhongliang Zhou; Mengxuan Hu; Mariah Salcedo; Nathan Gravel; Wayland Yeung; Aarya Venkat; Dongliang Guo 002; Jielu Zhang; Natarajan Kannan; Sheng Li 001 (CoRR, 2023)

Alignment-free estimation of sequence conservation for identifying functional sites using protein sequence embeddings. - Wayland Yeung; Zhongliang Zhou; Sheng Li 001; Natarajan Kannan (Briefings Bioinform., 2023)

Tree visualizations of protein sequence embedding space enable improved functional clustering of diverse protein superfamilies. - Wayland Yeung; Zhongliang Zhou; Liju Mathew; Nathan Gravel; Rahil Taujale; Brady O'boyle; Mariah Salcedo; Aarya Venkat; William Lanzilotta; Sheng Li 001; Natarajan Kannan (Briefings Bioinform., 2023)

Phosformer: an explainable transformer model for protein kinase-specific phosphorylation predictions. - Zhongliang Zhou; Wayland Yeung; Nathan Gravel; Mariah Salcedo; Saber Soleymani; Sheng Li 001; Natarajan Kannan (Bioinform., 2023)

A Comment On "The Illusion of Thinking": Reframing the Reasoning Cliff as an Agentic Gap. - Sheraz Khan; Subha Madhavan; Kannan Natarajan (CoRR, 2025)