Natural Isotopic Signatures of Variations in Body Nitrogen Fluxes: A Compartmental Model Analysis. - Nathalie Poupin; François Mariotti; Jean-François Huneau; Dominique Hermier; Hélène Fouillet (PLoS Comput. Biol., 2014)

MetExploreViz: web component for interactive metabolic network visualization. - Maxime Chazalviel; Clément Frainay; Nathalie Poupin; Florence Vinson; Benjamin Merlet; Yoann Gloaguen; Ludovic Cottret; Fabien Jourdan (Bioinform., 2018)

MetExplore: collaborative edition and exploration of metabolic networks. - Ludovic Cottret; Clément Frainay; Maxime Chazalviel; Floréal Cabanettes; Yoann Gloaguen; Etienne Camenen; Benjamin Merlet; Stéphanie Heux; Jean-Charles Portais; Nathalie Poupin; Florence Vinson; Fabien Jourdan (Nucleic Acids Res., 2018)

DEXOM: Diversity-based enumeration of optimal context-specific metabolic networks. - Pablo Rodríguez-Mier; Nathalie Poupin; Carlo de Blasio; Laurent Le Cam; Fabien Jourdan (PLoS Comput. Biol., 2021)

Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis. - Cecilia Wieder; Clément Frainay; Nathalie Poupin; Pablo Rodríguez-Mier; Florence Vinson; Juliette Cooke; Rachel P. J. Lai; Jacob G. Bundy; Fabien Jourdan; Timothy M. D. Ebbels (PLoS Comput. Biol., 2021)

A strategy to detect metabolic changes induced by exposure to chemicals from large sets of condition-specific metabolic models computed with enumeration techniques. - Louison Fresnais; Olivier Périn; Anne Riu; Romain Grall; Alban Ott; Bernard Fromenty; Jean-Clément Gallardo; Maximilian Stingl; Clément Frainay; Fabien Jourdan; Nathalie Poupin (BMC Bioinform., 2023)

PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. - Cecilia Wieder; Juliette Cooke; Clément Frainay; Nathalie Poupin; Russell Bowler; Fabien Jourdan; Katerina J. Kechris; Rachel P. J. Lai; Timothy M. D. Ebbels (PLoS Comput. Biol., 2024)

Genome scale metabolic network modelling for metabolic profile predictions. - Juliette Cooke; Maxime Delmas; Cecilia Wieder; Pablo Rodríguez-Mier; Clément Frainay; Florence Vinson; Timothy M. D. Ebbels; Nathalie Poupin; Fabien Jourdan (PLoS Comput. Biol., 2024)