Manipulation of FASTQ data with Galaxy. - Daniel J. Blankenberg; Assaf Gordon; Gregory Von Kuster; Nathan Coraor; James Taylor 001; Anton Nekrutenko (Bioinform., 2010)

Galaxy CloudMan: delivering cloud compute clusters. - Enis Afgan; Dannon Baker; Nathan Coraor; Brad Chapman; Anton Nekrutenko; James Taylor 001 (BMC Bioinform., 2010)

Integrating diverse databases into an unified analysis framework: a Galaxy approach. - Daniel J. Blankenberg; Nathan Coraor; Gregory Von Kuster; James Taylor 001; Anton Nekrutenko (Database J. Biol. Databases Curation, 2011)

Galaxy: A Gateway to Tools in e-Science. - Enis Afgan; Jeremy Goecks; Dannon Baker; Nate Coraor; Anton Nekrutenko; James Taylor 001 (Guide to e-Science, 2011)

A sustainable national gateway for biological computation. - James Taylor 001; Anton Nekrutenko; Nathan Coraor; Philip D. Blood; Alex Ropelewski; Zhihui Zhang; Josephine Palencia; Sergiu Sanielevici; Jared Yanovich; Robert Budden (XSEDE, 2013)

Galaxy cluster to cloud - genomics at scale. - Enis Afgan; Dannon Baker; John Chilton; Nathan Coraor; James Taylor 001 (GCE@SC, 2014)

Enabling cloud bursting for life sciences within Galaxy. - Enis Afgan; Nathan Coraor; John Chilton; Dannon Baker; James Taylor 001; The Galaxy Team (Concurr. Comput. Pract. Exp., 2015)

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. - Enis Afgan; Dannon Baker; Marius van den Beek; Daniel J. Blankenberg; Dave Bouvier; Martin Cech; John Chilton; Dave Clements; Nate Coraor; Carl Eberhard; Björn A. Grüning; Aysam Guerler; et al. (Nucleic Acids Res., 2016)

Jupyter and Galaxy: Easing entry barriers into complex data analyses for biomedical researchers. - Björn A. Grüning; Eric Rasche; Boris Rebolledo-Jaramillo; Carl Eberhard; Torsten Houwaart; John Chilton; Nate Coraor; Rolf Backofen; James Taylor 001; Anton Nekrutenko (PLoS Comput. Biol., 2017)

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update. - Enis Afgan; Dannon Baker; Bérénice Batut; Marius van den Beek; Dave Bouvier; Martin Cech; John Chilton; Dave Clements; Nate Coraor; Björn A. Grüning; Aysam Guerler; Jennifer Hillman-Jackson; et al. (Nucleic Acids Res., 2018)

Predicting runtimes of bioinformatics tools based on historical data: five years of Galaxy usage. - Anastasia Tyryshkina; Nate Coraor; Anton Nekrutenko (Bioinform., 2019)

GYAN: Accelerating Bioinformatics Tools in Galaxy with GPU-Aware Computation Mapping. - Gulsum Gudukbay; Jashwant Raj Gunasekaran; Yilin Feng; Mahmut T. Kandemir; Anton Nekrutenko; Chita R. Das; Paul Medvedev; Björn A. Grüning; Nate Coraor; Nathan Roach; Enis Afgan (IPDPS Workshops, 2021)

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update. - Enis Afgan; Anton Nekrutenko; Björn A. Grüning; Daniel J. Blankenberg; Jeremy Goecks; Michael C. Schatz; Alexander E. Ostrovsky; Alexandru Mahmoud; Andrew J. Lonie; Anna Syme; Anne Fouilloux; Anthony Bretaudeau; et al. (Nucleic Acids Res., 2022)

Right-sizing compute resource allocations for bioinformatics tools with Total Perspective Vortex. - Nuwan Goonasekera; Catherine J. Bromhead; Simon L. Gladman; Nate Coraor; Björn A. Grüning; Enis Afgan (CoRR, 2023)

Fast and accurate genome-wide predictions and structural modeling of protein-protein interactions using Galaxy. - Aysam Guerler; Dannon Baker; Marius van den Beek; Björn A. Grüning; Dave Bouvier; Nate Coraor; Stephen D. Shank; Jordan D. Zehr; Michael C. Schatz; Anton Nekrutenko (BMC Bioinform., 2023)