Network-level analysis of metabolic regulation in the human red blood cell using random sampling and singular value decomposition. - Christian L. Barrett; Nathan D. Price 001; Bernhard O. Palsson (BMC Bioinform., 2006)

Metabolite coupling in genome-scale metabolic networks. - Scott A. Becker; Nathan D. Price 001; Bernhard O. Palsson (BMC Bioinform., 2006)

Long-Range Periodic Patterns in Microbial Genomes Indicate Significant Multi-Scale Chromosomal Organization. - Timothy E. Allen; Nathan D. Price 001; Andrew R. Joyce; Bernhard Ø. Palsson (PLoS Comput. Biol., 2006)

Matrix Formalism to Describe Functional States of Transcriptional Regulatory Systems. - Erwin P. Gianchandani; Jason A. Papin; Nathan D. Price 001; Andrew R. Joyce; Bernhard Ø. Palsson (PLoS Comput. Biol., 2006)

Set-based complexity and biological information - David J. Galas; Matti Nykter; Gregory W. Carter; Nathan D. Price 001; Ilya Shmulevich (CoRR, 2008)

Biological Data Integration and Model Building. - James A. Eddy; Nathan D. Price 001 (Encyclopedia of Complexity and Systems Science, 2009)

Identifying Tightly Regulated and Variably Expressed Networks by Differential Rank Conservation (DIRAC). - James A. Eddy; Leroy E. Hood; Nathan D. Price 001; Donald Geman (PLoS Comput. Biol., 2010)

Biological information as set-based complexity. - David J. Galas; Matti Nykter; Gregory W. Carter; Nathan D. Price 001; Ilya Shmulevich (IEEE Trans. Inf. Theory, 2010)

Introduction to the special issue on information theory in molecular biology and neuroscience. - Olgica Milenkovic; Gil Alterovitz; Gerard Battail; Todd P. Coleman; Joachim Hagenauer; Sean P. Meyn; Nathan D. Price 001; Marco Ramoni; Ilya Shmulevich; Wojciech Szpankowski (IEEE Trans. Inf. Theory, 2010)

Session Introduction. - Gürkan Bebek; Mehmet Koyutürk; Mark R. Chance; Nathan D. Price 001 (Pacific Symposium on Biocomputing, 2011)

Graphics processing unit implementations of relative expression analysis algorithms enable dramatic computational speedup. - Andrew T. Magis; John C. Earls; Youn-Hee Ko; James A. Eddy; Nathan D. Price 001 (Bioinform., 2011)

Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052. - Caroline B. Milne; James A. Eddy; Ravali Raju; Soroush Ardekani; Pan-Jun Kim; Ryan S. Senger; Yong-Su Jin; Hans P. Blaschek; Nathan D. Price 001 (BMC Syst. Biol., 2011)

Genetic Co-Occurrence Network across Sequenced Microbes. - Pan-Jun Kim; Nathan D. Price 001 (PLoS Comput. Biol., 2011)

Network biology methods integrating biological data for translational science. - Gürkan Bebek; Mehmet Koyutürk; Nathan D. Price 001; Mark R. Chance (Briefings Bioinform., 2012)

The top-scoring 'N' algorithm: a generalized relative expression classification method from small numbers of biomolecules. - Andrew T. Magis; Nathan D. Price 001 (BMC Bioinform., 2012)

Reconstruction of genome-scale metabolic models for 126 human tissues using mCADRE. - Yuliang Wang; James A. Eddy; Nathan D. Price 001 (BMC Syst. Biol., 2012)

Version 6 of the consensus yeast metabolic network refines biochemical coverage and improves model performance. - Benjamin D. Heavner; Kieran Smallbone; Nathan D. Price 001; Larry P. Walker (Database J. Biol. Databases Curation, 2013)

AUREA: an open-source software system for accurate and user-friendly identification of relative expression molecular signatures. - John C. Earls; James A. Eddy; Cory C. Funk; Youn-Hee Ko; Andrew T. Magis; Nathan D. Price 001 (BMC Bioinform., 2013)

Metabolic Constraint-Based Refinement of Transcriptional Regulatory Networks. - Sriram Chandrasekaran; Nathan D. Price 001 (PLoS Comput. Biol., 2013)

Multi-study Integration of Brain Cancer Transcriptomes Reveals Organ-Level Molecular Signatures. - Jaeyun Sung; Pan-Jun Kim; Shuyi Ma; Cory C. Funk; Andrew T. Magis; Yuliang Wang; Leroy E. Hood; Donald Geman; Nathan D. Price 001 (PLoS Comput. Biol., 2013)

Likelihood-Based Gene Annotations for Gap Filling and Quality Assessment in Genome-Scale Metabolic Models. - Matthew N. Benedict; Michael B. Mundy; Christopher S. Henry; Nicholas Chia; Nathan D. Price 001 (PLoS Comput. Biol., 2014)

Big biomedical data as the key resource for discovery science. - Arthur W. Toga; Ian T. Foster; Carl Kesselman; Ravi K. Madduri; Kyle Chard; Eric W. Deutsch; Nathan D. Price 001; Gustavo Glusman; Benjamin D. Heavner; Ivo D. Dinov; Joseph Ames; John D. Van Horn; et al. (J. Am. Medical Informatics Assoc., 2015)

Comparative Analysis of Yeast Metabolic Network Models Highlights Progress, Opportunities for Metabolic Reconstruction. - Benjamin D. Heavner; Nathan D. Price 001 (PLoS Comput. Biol., 2015)

Integrated Modeling of Gene Regulatory and Metabolic Networks in Mycobacterium tuberculosis. - Shuyi Ma; Kyle J. Minch; Tige R. Rustad; Samuel Hobbs; Suk-Lin Zhou; David R. Sherman; Nathan D. Price 001 (PLoS Comput. Biol., 2015)

I'll take that to go: Big data bags and minimal identifiers for exchange of large, complex datasets. - Kyle Chard; Mike D'Arcy; Benjamin D. Heavner; Ian T. Foster; Carl Kesselman; Ravi K. Madduri; Alexis A. Rodriguez; Stian Soiland-Reyes; Carole A. Goble; Kristi Clark; Eric W. Deutsch; Ivo D. Dinov; et al. (IEEE BigData, 2016)

Relative stability of network states in Boolean network models of gene regulation in development. - Joseph Xu Zhou; Areejit Samal; Aymeric Fouquier d'Hérouël; Nathan D. Price 001; Sui Huang (Biosyst., 2016)

Reproducible big data science: A case study in continuous FAIRness. - Ravi K. Madduri; Kyle Chard; Michel D'Arcy; Segun Jung; Alexis A. Rodriguez; Dinanath Sulakhe; Eric Deutsch; Cory C. Funk; Benjamin D. Heavner; Matthew A. Richards; Paul Shannon; Gustavo Glusman; et al. (RO, 2018)

ProbAnnoWeb and ProbAnnoPy: probabilistic annotation and gap-filling of metabolic reconstructions. - Brendan King; Terry Farrah; Matthew A. Richards; Michael B. Mundy; Evangelos Simeonidis; Nathan D. Price 001 (Bioinform., 2018)

OptRAM: In-silico strain design via integrative regulatory-metabolic network modeling. - Fangzhou Shen; Renliang Sun; Jie Yao; Jian Li; Qian Liu; Nathan D. Price 001; Chenguang Liu; Zhuo Wang (PLoS Comput. Biol., 2019)