The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing. - Nathan L. Clement; Quinn Snell; Mark J. Clement; Peter C. Hollenhorst; Jahnvi Purwar; Barbara J. Graves; Bradley R. Cairns; W. Evan Johnson (Bioinform., 2010)

Parallel Mapping Approaches for GNUMAP. - Nathan L. Clement; Mark J. Clement; Quinn Snell; W. Evan Johnson (IPDPS Workshops, 2011)

Parallel Pair-HMM SNP Detection. - Nathan L. Clement; Brent A. Shepherd; Paul M. Bodily; Sukhbat Tumur-Ochir; Younghoon Gim; Quinn Snell; Mark J. Clement; W. Evan Johnson (IPDPS Workshops, 2012)

Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data. - Changjin Hong; Nathan L. Clement; Spencer Clement; Saher Sue Hammoud; Douglas T. Carrell; Bradley R. Cairns; Quinn Snell; Mark J. Clement; William Evan Johnson (BMC Bioinform., 2013)

ADaM: augmenting existing approximate fast matching algorithms with efficient and exact range queries. - Nathan L. Clement; Lee Parnell Thompson; Daniel P. Miranker (BMC Bioinform., 2014)

Quantified Uncertainty of Flexible Protein-Protein Docking Algorithms. - Nathan L. Clement (WABI, 2019)