GEOfetch: a command-line tool for downloading data and standardized metadata from GEO and SRA. - Oleksandr Khoroshevskyi; Nathan Leroy; Vincent P. Reuter; Nathan C. Sheffield (Bioinform., 2023)

DeepGSEA: explainable deep gene set enrichment analysis for single-cell transcriptomic data. - Guangzhi Xiong; Nathan Leroy; Stefan Bekiranov; Nathan C. Sheffield; Aidong Zhang (Bioinform., 2024)