Parallelization of software pipelines using the mpififo Tool. - Nathan T. Weeks; Marina Kraeva; Glenn R. Luecke (CLUSTER, 2013)

Optimizing the PCIT algorithm on stampede's Xeon and Xeon Phi processors for faster discovery of biological networks. - Lars Koesterke; Kent F. Milfeld; Matthew W. Vaughn; Daniel Stanzione; James E. Koltes; Nathan T. Weeks; James M. Reecy (XSEDE, 2013)

Discovery of biological networks using an optimized partial correlation coefficient with information theory algorithm on Stampede's Xeon and Xeon Phi processors. - Lars Koesterke; James E. Koltes; Nathan T. Weeks; Kent F. Milfeld; Matthew W. Vaughn; James M. Reecy; Daniel Stanzione (Concurr. Comput. Pract. Exp., 2014)

ipcmd: a command-line interface to System V semaphores and message queues. - Nathan T. Weeks; Marina Kraeva; Glenn R. Luecke (Concurr. Comput. Pract. Exp., 2014)

Fast Epistasis Detection in Large-Scale GWAS for Intel Xeon Phi Clusters. - Glenn R. Luecke; Nathan T. Weeks; Brandon M. Groth; Marina Kraeva; Li Ma; Luke M. Kramer; James E. Koltes; James M. Reecy (TrustCom/BigDataSE/ISPA (3), 2015)

Performance Analysis and Optimization of SAMtools Sorting. - Nathan T. Weeks; Glenn R. Luecke (Euro-Par Workshops, 2016)

Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family. - Sudhansu Dash; Jacqueline D. Campbell; Ethalinda K. S. Cannon; Alan M. Cleary; Wei Huang; Scott R. Kalberer; Vijay Karingula; Alex G. Rice; Jugpreet Singh; Pooja E. Umale; Nathan T. Weeks; Andrew P. Wilkey; et al. (Nucleic Acids Res., 2016)

Comparing Allinea's and Intel's performance tools for HPC. - Glenn R. Luecke; Brandon M. Groth; Nathan T. Weeks; Marina Kraeva (SpringSim (HPC), 2017)

Optimization of SAMtools sorting using OpenMP tasks. - Nathan T. Weeks; Glenn R. Luecke (Clust. Comput., 2017)

Challenges in Developing MPI Fault-Tolerant Fortran Applications. - Nathan T. Weeks; Glenn R. Luecke; Pieter Maris; James P. Vary (CLUSTER, 2018)

High-performance epistasis detection in quantitative trait GWAS. - Nathan T. Weeks; Glenn R. Luecke; Brandon M. Groth; Marina Kraeva; Li Ma; Luke M. Kramer; James E. Koltes; James M. Reecy (Int. J. High Perform. Comput. Appl., 2018)

Ten quick tips for sharing open genomic data. - Anne V. Brown; Jacqueline D. Campbell; Teshale Assefa; David M. Grant; Rex T. Nelson; Nathan T. Weeks; Steven B. Cannon (PLoS Comput. Biol., 2018)

BookVIS: Enhancing Browsing Experiences in Bookstores and Libraries. - Zona Kostic; Nathan T. Weeks; Johann Philipp Dreessen; Jelena Dowey; Jeff Baglioni (SIGGRAPH Asia Posters, 2019)

Refining Fortran Failed Images. - Nathan T. Weeks; Glenn R. Luecke; Gurpur M. Prabhu (ESPM2@SC, 2020)

Visual Companion for Booklovers. - Zona Kostic; Jared Jessup; Jeffrey Baglioni; Nathan T. Weeks; Johann Philipp Dreessen; Ning Chen; Tianyu Liu (CoRR, 2020)

A new decade and new data at SoyBase, the USDA-ARS soybean genetics and genomics database. - Anne V. Brown; Shawn I. Conners; Wei Huang; Andrew P. Wilkey; David M. Grant; Nathan T. Weeks; Steven B. Cannon; Michelle A. Graham; Rex T. Nelson (Nucleic Acids Res., 2021)