Generative models for protein sequence modeling: recent advances and future directions. - Mehrsa Mardikoraem; Zirui Wang; Nathaniel Pascual; Daniel R. Woldring (Briefings Bioinform., 2023)

Predicting inhibitors of OATP1B1 via heterogeneous OATP-ligand interaction graph neural network (HOLIgraph). - Mehrsa Mardikoraem; Joelle N. Eaves; Theodore Belecciu; Nathaniel Pascual; Alexander Aljets; Bruno Hagenbuch; Erik M. Shapiro; Benjamin J. Orlando; Daniel R. Woldring (J. Cheminformatics, 2025)