An efficient method for fuzzy identification of regulatory events in gene expression time series data. - L. Gwenn Volkert; Nawar Malhis (CIBCB, 2004)

An Efficient Approach for Candidate Set Generation. - Nawar Malhis; Arden Ruttan; Hazem H. Refai (J. Inf. Knowl. Manag., 2005)

Detecting Gene Regulation Relations from Microarray Time Series Data. - Nawar Malhis; Arden Ruttan (MLMTA, 2006)

Detecting Protein-Domains DNA-Motifs Association in Saccharomyces cerevisiae Regulatory Networks. - Nawar Malhis; Kelvin Xi Zhang; B. F. Francis Ouellette (AINA Workshops (1), 2007)

Slider - maximum use of probability information for alignment of short sequence reads and SNP detection. - Nawar Malhis; Yaron S. N. Butterfield; Martin Ester; Steven J. M. Jones (Bioinform., 2009)

High quality SNP calling using Illumina data at shallow coverage. - Nawar Malhis; Steven J. M. Jones (Bioinform., 2010)

Computational identification of MoRFs in protein sequences. - Nawar Malhis; Jörg Gsponer (Bioinform., 2015)

MoRFchibi SYSTEM: software tools for the identification of MoRFs in protein sequences. - Nawar Malhis; Matthew Jacobson; Jörg Gsponer (Nucleic Acids Res., 2016)

LIST-S2: taxonomy based sorting of deleterious missense mutations across species. - Nawar Malhis; Matthew Jacobson; Steven J. M. Jones; Jörg Gsponer (Nucleic Acids Res., 2020)

DescribePROT: database of amino acid-level protein structure and function predictions. - Bi Zhao; Akila Katuwawala; Christopher J. Oldfield; A. Keith Dunker; Eshel Faraggi; Jörg Gsponer; Andrzej Kloczkowski; Nawar Malhis; Milot Mirdita; Zoran Obradovic; Johannes Söding; Martin Steinegger; et al. (Nucleic Acids Res., 2021)

CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins. - Alessio Del Conte; Adel Bouhraoua; Mahta Mehdiabadi; Damiano Clementel; Alexander Miguel Monzon; Alex S. Holehouse; Daniel A. Griffith; Ryan J. Emenecker; Ashwini Patil; Ronesh Sharma; Tatsuhiko Tsunoda; Alok Sharma; et al. (Nucleic Acids Res., 2023)