Efficient Runtime Environment for Coupled Multi-physics Simulations: Dynamic Resource Allocation and Load-Balancing. - Soon-Heum Ko; Nayong Kim; Joohyun Kim 001; Abhinav Thota; Shantenu Jha (CCGRID, 2010)

MapReduce-Based RESTMD: Enabling Large-Scale Sampling Tasks with Distributed HPC Systems. - Praveenkumar Kondikoppa; Richard Platania; Seung-Jong Park; Tom Keyes; Jaegil Kim; Nayong Kim; Joohyun Kim 001; Shuju Bai (IWSG, 2014)

Enabling Large-Scale Biomolecular Conformation Search with Replica Exchange Statistical Temperature Molecular Dynamics (RESTMD) over HPC and Cloud Computing Resources. - Nayong Kim; Richard Platania; Wei Huang; Chris Knight 001; Tom Keyes; Seung-Jong Park; Joohyun Kim 001 (AINA Workshops, 2015)

A Scalable Pipeline for Transcriptome Profiling Tasks with On-Demand Computing Clouds. - Shayan Shams; Nayong Kim; Xiandong Meng; Ming Tai Ha; Shantenu Jha; Zhong Wang 003; Joohyun Kim 001 (IPDPS Workshops, 2016)

Hadoop-based replica exchange over heterogeneous distributed cyberinfrastructures. - Richard Platania; Shayan Shams; Chui-Hui Chiu; Nayong Kim; Joohyun Kim 001; Seung-Jong Park (Concurr. Comput. Pract. Exp., 2017)

Learning Flexible Body Collision Dynamics with Hierarchical Contact Mesh Transformer. - Youn-Yeol Yu; Jeongwhan Choi 002; Woojin Cho; Kookjin Lee; Nayong Kim; Kiseok Chang; ChangSeung Woo; Ilho Kim; SeokWoo Lee; Joon-Young Yang; Sooyoung Yoon; Noseong Park (ICLR, 2024)

Physics-constrained graph neural networks for spatio-temporal prediction of drop impact on OLED display panels. - Jiyong Kim; Jangseop Park; Nayong Kim; Youn-Yeol Yu; Kiseok Chang; ChangSeung Woo; Sunwoong Yang; Namwoo Kang (Expert Syst. Appl., 2025)