An analysis of the kinetics of unstable enzymatic systems using MAPLE. - Necmettin Yildirim; Mustafa Bayram (Appl. Math. Comput., 2000)

Derivation of conservation relationships for metabolic networks using MAPLE. - Necmettin Yildirim; Mustafa Bayram (Appl. Math. Comput., 2000)

Automatic calculation of Alexander polynomials of (3, k)-Torus knots. - Mustafa Bayram; Hakan Simsek; Necmettin Yildirim (Appl. Math. Comput., 2003)

Parameter estimation of nonlinear models in biochemistry: a comparative study on optimization methods. - Necmettin Yildirim; Fatih Akçay; Hüseyin Okur; Derya Yildirim (Appl. Math. Comput., 2003)

Application of Gröbner Bases theory to derive rate equations for enzyme catalysed reactions with two or more substrates or products. - Necmettin Yildirim; Nurullah Ankaralioglu; Derya Yildrim; Fatih Akçay (Appl. Math. Comput., 2003)

An improvement on Fibonacci search method in optimization theory. - Murat Subasi; Necmettin Yildirim; Bünyamin Yildiz (Appl. Math. Comput., 2004)

Metabolic control analysis of trio enzymes system. - Mustafa Bayram; Necmettin Yildirim (Appl. Math. Comput., 2005)

Differential transcriptional regulation by alternatively designed mechanisms: A mathematical modeling approach. - Necmettin Yildirim; Mehmet Emin Aktas; Seyma Nur Ozcan; Esra Akbas; Ahmet Ay (Silico Biol., 2017)

Regulatory Effects of Cooperativity and Signal Profile on Adaptive Dynamics in Incoherent Feedforward Loop Networks. - Necmettin Yildirim; Thomas Brew; Ahmet Ay (Silico Biol., 2025)