Finding regulatory modules through large-scale gene-expression data analysis. - M. Kloster; Chao Tang; Ned S. Wingreen (Bioinform., 2005)

A Curvature-Mediated Mechanism for Localization of Lipids to Bacterial Poles. - Kerwyn Casey Huang; Ranjan Mukhopadhyay; Ned S. Wingreen (PLoS Comput. Biol., 2006)

Chemotaxis Receptor Complexes: From Signaling to Assembly. - Robert G. Endres; Joseph J. Falke; Ned S. Wingreen (PLoS Comput. Biol., 2007)

An improved pairwise decomposable finite-difference Poisson-Boltzmann method for computational protein design. - Christina L. Vizcarra; Naigong Zhang; Shannon A. Marshall; Ned S. Wingreen; Chen Zeng; Stephen L. Mayo (J. Comput. Chem., 2008)

PSICIC: Noise and Asymmetry in Bacterial Division Revealed by Computational Image Analysis at Sub-Pixel Resolution. - Jonathan M. Guberman; Allison Fay; Jonathan Dworkin; Ned S. Wingreen; Zemer Gitai (PLoS Comput. Biol., 2008)

Chemotaxis in Escherichia coli: A Molecular Model for Robust Precise Adaptation. - Clinton H. Hansen; Robert G. Endres; Ned S. Wingreen (PLoS Comput. Biol., 2008)

Steps in the Bacterial Flagellar Motor. - Thierry Mora; Howard Yu; Yoshiyuki Sowa; Ned S. Wingreen (PLoS Comput. Biol., 2009)

Achieving Optimal Growth through Product Feedback Inhibition in Metabolism. - Sidhartha Goyal; Jie Yuan; Thomas Chen; Joshua D. Rabinowitz; Ned S. Wingreen (PLoS Comput. Biol., 2010)

Evaluating Gene Expression Dynamics Using Pairwise RNA FISH Data. - Matthieu Wyart; David Botstein; Ned S. Wingreen (PLoS Comput. Biol., 2010)

Filament Depolymerization Can Explain Chromosome Pulling during Bacterial Mitosis. - Edward J. Banigan; Michael A. Gelbart; Zemer Gitai; Ned S. Wingreen; Andrea J. Liu (PLoS Comput. Biol., 2011)

Does the Potential for Chaos Constrain the Embryonic Cell-Cycle Oscillator? - R. Scott McIsaac; Kerwyn Casey Huang; Anirvan M. Sengupta; Ned S. Wingreen (PLoS Comput. Biol., 2011)

The Role of Membrane-Mediated Interactions in the Assembly and Architecture of Chemoreceptor Lattices. - Christoph A. Haselwandter; Ned S. Wingreen (PLoS Comput. Biol., 2014)

Established Microbial Colonies Can Survive Type VI Secretion Assault. - David Bruce Borenstein; Peter Ringel; Marek Basler; Ned S. Wingreen (PLoS Comput. Biol., 2015)

Optimal Census by Quorum Sensing. - Thibaud O. Taillefumier; Ned S. Wingreen (PLoS Comput. Biol., 2015)

Revealing evolutionary constraints on proteins through sequence analysis. - Shou-Wen Wang; Anne-Florence Bitbol; Ned S. Wingreen (PLoS Comput. Biol., 2019)

Modeling microbial metabolic trade-offs in a chemostat. - Zhiyuan Li; Bo Liu; Sophia Hsin-Jung Li; Christopher G. King; Zemer Gitai; Ned S. Wingreen (PLoS Comput. Biol., 2020)

Implications of localized charge for human influenza A H1N1 hemagglutinin evolution: Insights from deep mutational scans. - Chadi M. Saad-Roy; Nimalan Arinaminpathy; Ned S. Wingreen; Simon A. Levin; Joshua M. Akey; Bryan T. Grenfell (PLoS Comput. Biol., 2020)

Motif-pattern dependence of biomolecular phase separation driven by specific interactions. - Benjamin G. Weiner; Andrew G. T. Pyo; Yigal Meir; Ned S. Wingreen (PLoS Comput. Biol., 2021)

Global and gene-specific translational regulation in Escherichia coli across different conditions. - Di Zhang; Sophia Hsin-Jung Li; Christopher G. King; Ned S. Wingreen; Zemer Gitai; Zhiyuan Li (PLoS Comput. Biol., 2022)

Data-driven Discovery of Biophysical T Cell Receptor Co-specificity Rules. - Andrew G. T. Pyo; Yuta Nagano; Martina Milighetti; James Henderson; Curtis G. Callan Jr.; Benny Chain; Ned S. Wingreen; Andreas Tiffeau-Mayer (CoRR, 2024)