Discovering Putative Protein Targets of Small Molecules: A Study of the p53 Activator Nutlin. - Minh N. Nguyen; Neeladri Sen; Meiyin Lin; Thomas Leonard Joseph; Candida Vaz; Vivek Tanavde; Luke Way; Ted R. Hupp; Chandra S. Verma 001; M. S. Madhusudhan 001 (J. Chem. Inf. Model., 2019)

The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies. - Vaishali P. Waman; Neeladri Sen; Mihaly Varadi; Antoine Daina; Shoshana J. Wodak; Vincent Zoete; Sameer Velankar; Christine A. Orengo (Briefings Bioinform., 2021)

CATH functional families predict functional sites in proteins. - Sayoni Das; Harry M. Scholes; Neeladri Sen; Christine A. Orengo (Bioinform., 2021)

CATH: increased structural coverage of functional space. - Ian Sillitoe; Nicola Bordin; Natalie L. Dawson; Vaishali P. Waman; Paul Ashford; Harry M. Scholes; Camilla S. M. Pang; Laurel Woodridge; Clemens Rauer; Neeladri Sen; Mahnaz Abbasian; Sean Le Cornu; et al. (Nucleic Acids Res., 2021)

Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs. - Neeladri Sen; Ivan Anishchenko; Nicola Bordin; Ian Sillitoe; Sameer Velankar; David Baker 001; Christine A. Orengo (Briefings Bioinform., 2022)

CATHe: detection of remote homologues for CATH superfamilies using embeddings from protein language models. - Vamsi Nallapareddy; Nicola Bordin; Ian Sillitoe; Michael Heinzinger; Maria Littmann; Vaishali P. Waman; Neeladri Sen; Burkhard Rost; Christine A. Orengo (Bioinform., 2023)