Transform-MinER: transforming molecules in enzyme reactions. - Jonathan D. Tyzack; António J. M. Ribeiro; Neera Borkakoti; Janet M. Thornton (Bioinform., 2018)

Finding enzyme cofactors in Protein Data Bank. - Abhik Mukhopadhyay; Neera Borkakoti; Lukás Pravda; Jonathan D. Tyzack; Janet M. Thornton; Sameer Velankar (Bioinform., 2019)

GRaSP: a graph-based residue neighborhood strategy to predict binding sites. - Charles Abreu Santana; Sabrina de Azevedo Silveira; João P. A. Moraes; Sandro C. Izidoro; Raquel Cardoso de Melo Minardi; António J. M. Ribeiro; Jonathan D. Tyzack; Neera Borkakoti; Janet M. Thornton (Bioinform., 2020)

PDBe-KB: a community-driven resource for structural and functional annotations. - Mihaly Varadi; John M. Berrisford; Mandar S. Deshpande; Sreenath Nair; Aleksandras Gutmanas; David R. Armstrong; Lukás Pravda; Bissan Al-Lazikani; Stephen Anyango; Geoffrey J. Barton; Karel Berka; Tom L. Blundell; et al. (Nucleic Acids Res., 2020)