Gated Hidden Markov Models for Early Prediction of Outcome of Internet-Based Cognitive Behavioral Therapy. - Negar Safinianaini; Henrik Boström; Viktor Kaldo (AIME, 2019)

Orthogonal Mixture of Hidden Markov Models. - Negar Safinianaini; Camila P. E. de Souza; Henrik Boström; Jens Lagergren (ECML/PKDD (1), 2020)

Towards interpretability of Mixtures of Hidden Markov Models. - Negar Safinianaini; Henrik Boström (CoRR, 2021)

VaiPhy: a Variational Inference Based Algorithm for Phylogeny. - Hazal Koptagel; Oskar Kviman; Harald Melin; Negar Safinianaini; Jens Lagergren (NeurIPS, 2022)

Novel likelihood-based inference techniques for sequential data with medical and biological applications. - Negar Safinianaini (2022)

CopyMix: Mixture model based single-cell clustering and copy number profiling using variational inference. - Negar Safinianaini; Camila P. E. de Souza; Andrew Roth; Hazal Koptagel; Hosein Toosi; Jens Lagergren (Comput. Biol. Chem., 2024)