Structure-Based Analysis of Protein Binding Pockets Using Von Neumann Entropy. - Negin Forouzesh; Mohammad Reza Kazemi 001; Ali Mohades (ISBRA, 2014)

Grid-Based Surface Generalized Born Model for Calculation of Electrostatic Binding Free Energies. - Negin Forouzesh; Saeed Izadi; Alexey V. Onufriev (J. Chem. Inf. Model., 2017)

Robustness of Multidimensional Optimization Outcomes: A General Approach and a Case Study. - Negin Forouzesh; Layne T. Watson; Alexey V. Onufriev (SpringSim, 2020)

Efficient Biomolecular Computations Towards Applications in Drug Discovery. - Negin Forouzesh (2020)

Calculation of Protein-Ligand Binding Free Energy Using a Physics-Guided Neural Network. - Sahar Cain; Ali Risheh; Negin Forouzesh (BIBM, 2021)

Analysis of Macular Thickness Deviation Maps for Diagnosis of Glaucoma. - Bingnan Zhou; Farnaz Mohammadi; Jung Soo Lim; Negin Forouzesh; Hassan Ghasemzadeh 001; Navid Amini (ISVC (2), 2021)

Low Data Image Analysis with a Generative Adversarial Network: A Case Study on Women Pelvic MRI Scans. - Sabino Ramirez; Mathias Brieu; Negin Forouzesh (BIBM, 2022)

Calculating the Binding Entropy of Host-Guest Systems with Physics-Guided Neural Networks. - Alles Rebel; Ali Risheh; Negin Massoudian; Negin Forouzesh (BIBM, 2022)

Physics-Guided Deep Generative Model For New Ligand Discovery. - Dikshant Sagar; Ali Risheh; Nida Sheikh; Negin Forouzesh (BCB, 2023)

AmberTools. - David A. Case; Hasan Metin Aktulga; Kellon Belfon; David S. Cerutti; G. Andrés Cisneros; Vinícius Wilian D. Cruzeiro; Negin Forouzesh; Timothy J. Giese; Andreas W. Götz; Holger Gohlke; Saeed Izadi; Koushik Kasavajhala; et al. (J. Chem. Inf. Model., 2023)

Optimal Dielectric Boundary for Binding Free Energy Estimates in the Implicit Solvent. - Negin Forouzesh; Fatemeh Ghafouri; Igor S. Tolokh; Alexey V. Onufriev (J. Chem. Inf. Model., 2024)

Molecular Docking Improved with Human Spatial Perception Using Virtual Reality. - Shivam Mishra; Missael Corro-Flores; David Krum; Negin Forouzesh (IEEE Trans. Vis. Comput. Graph., 2024)