Exploiting maximal dependence decomposition to identify conserved motifs from a group of aligned signal sequences. - Tzong-Yi Lee; Zong-Qing Lin; Sheng-Jen Hsieh; Neil Arvin Bretaña; Cheng-Tsung Lu (Bioinform., 2011)

PlantPhos: using Maximal Dependence Decomposition to Identify Plant Phosphorylation Sites with Substrate Site Specificity. - Tzong-Yi Lee; Neil Arvin Bretaña; Cheng-Tsung Lu (BMC Bioinform., 2011)

Investigation and identification of protein γ-glutamyl carboxylation sites. - Tzong-Yi Lee; Cheng-Tsung Lu; Shu-An Chen; Neil Arvin Bretaña; Tzu-Hsiu Cheng; Min-Gang Su; Kai-Yao Huang (BMC Bioinform., 2011)

Carboxylator: incorporating solvent-accessible surface area for identifying protein carboxylation sites. - Cheng-Tsung Lu; Shu-An Chen; Neil Arvin Bretaña; Tzu-Hsiu Cheng; Tzong-Yi Lee (J. Comput. Aided Mol. Des., 2011)

ViralPhos: incorporating a recursively statistical method to predict phosphorylation sites on virus proteins. - Kai-Yao Huang; Cheng-Tsung Lu; Neil Arvin Bretaña; Tzong-Yi Lee; Tzu-Hao Chang (BMC Bioinform., 2013)

dbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications. - Cheng-Tsung Lu; Kai-Yao Huang; Min-Gang Su; Tzong-Yi Lee; Neil Arvin Bretaña; Wen-Chi Chang; Yi-Ju Chen; Yu-Ju Chen; Hsien-Da Huang (Nucleic Acids Res., 2013)

Characterization and identification of ubiquitin conjugation sites with E3 ligase recognition specificities. - Van-Nui Nguyen; Kai-Yao Huang; Chien-Hsun Huang; Tzu-Hao Chang; Neil Arvin Bretaña; K. Robert Lai; Julia Weng; Tzong-Yi Lee (BMC Bioinform., 2015)

A two-layered machine learning method to identify protein O-GlcNAcylation sites with O-GlcNAc transferase substrate motifs. - Hui-Ju Kao; Chien-Hsun Huang; Neil Arvin Bretaña; Cheng-Tsung Lu; Kai-Yao Huang; Shun-Long Weng; Tzong-Yi Lee (BMC Bioinform., 2015)

Predicting Student Success for Programming Courses in a Fully Online Learning Environment. - Neil Arvin Bretaña; Mehdi Robati; Aastha Rawat; Aashi Pandey; Shreya Khatri; Kritika Kaushal; Sidarth Nair; Gerald H. L. Cheang; Rhoda Abadia (ICCE, 2020)

A design-thinking approach to identifying needs in a Danish healthcare setting. - Neil Arvin Bretaña; Ea Høg Utoft; Sys Zoffmann Glud (CENTERIS/ProjMAN/HCist, 2022)

Forecasting inventory for the state-wide pharmaceutical service of South Australia. - Rachel Rushton; Olivia Lorraine; Junia Tiong; Masud Karim; Rowena Dixon; Winifred Greenshields; Richard Marotti; Neil Arvin Bretaña (CENTERIS/ProjMAN/HCist, 2022)