Rank order metrics for quantifying the association of sequence features with gene regulation. - Neil D. Clarke; Joshua A. Granek (Bioinform., 2003)

Transcription Factor Binding Probabilities in Orthologous Promoters: An Alignment-Free Approach to the Inference of Functional Regulatory Targets. - Xiao Liu; Neil D. Clarke (RECOMB-CG, 2009)

Inferring Transcription Factor Targets from Gene Expression Changes and Predicted Promoter Occupancy. - Zhen Xuan Yeo; Hock Chuan Yeo; Joan Keng Suan Yeo; Ai Li Yeo; Ye Li; Neil D. Clarke (J. Comput. Biol., 2009)

Blurring of High-Resolution Data Shows that the Effect of Intrinsic Nucleosome Occupancy on Transcription Factor Binding is Mostly Regional, Not Local. - Wee Siong Goh; Yuriy L. Orlov; Jingmei Li; Neil D. Clarke (PLoS Comput. Biol., 2010)

Computer and Statistical Analysis of Transcription Factor Binding and Chromatin Modifications by ChIP-seq data in Embryonic Stem Cell. - Yuriy L. Orlov; Han Xu; Dmitry A. Afonnikov; Bing Lim; Jian-Chien Heng; Ping Yuan; Ming Chen 005; Junli Yan; Neil D. Clarke; Nina Orlova; Mikael Huss; Konstantin V. Gunbin; et al. (J. Integr. Bioinform., 2012)

Between-Session Reliability of Field-Based Assessments of Isometric Neck Strength. - Samuel W. Oxford; Neil D. Clarke; Jason Tallis (Sensors, 2024)