GeneDB: a resource for prokaryotic and eukaryotic organisms. - Christiane Hertz-Fowler; Chris S. Peacock; Valerie Wood; Martin Aslett; Arnaud Kerhornou; Paul Mooney; Adrian Tivey; Matthew Berriman; Neil Hall; Kim Rutherford; Julian Parkhill; Alasdair C. Ivens; et al. (Nucleic Acids Res., 2004)

Gemina: A Web-Based Epidemiology and Genomic Metadata System Designed to Identify Infectious Agents. - Lynn M. Schriml; Aaron Gussman; Kathy Phillippy; Samuel V. Angiuoli; Kumar Hari; Alan Goates; Ravi Jain; Tanja Davidsen; Anurhada Ganapathy; Elodie Ghedin; Steven Salzberg; Owen White; et al. (BioSurveillance, 2007)

GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database. - Lynn M. Schriml; Cesar Arze; Suvarna Nadendla; Anurhada Ganapathy; Victor Felix; Anup Mahurkar; Katherine H. Phillippy; Aaron Gussman; Samuel V. Angiuoli; Elodie Ghedin; Owen White; Neil Hall (Nucleic Acids Res., 2010)

Cardinality constraints on qualitatively uncertain data. - Neil Hall; Henning Köhler; Sebastian Link; Henri Prade; Xiaofang Zhou 001 (Data Knowl. Eng., 2015)

Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data. - Melanie Schirmer; Rosalinda D'Amore; Umer Zeeshan Ijaz; Neil Hall; Christopher Quince (BMC Bioinform., 2016)

MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads. - Marcela Uliano-Silva; João Gabriel R. N. Ferreira; Ksenia Krasheninnikova; Mark L. Blaxter; Nova Mieszkowska; Neil Hall; Peter Holland; Richard Durbin; Thomas Richards; Paul J. Kersey; Peter Hollingsworth; Willie Wilson; et al. (BMC Bioinform., 2023)