The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. - Seung Yon Rhee; William D. Beavis; Tanya Z. Berardini; Guanghong Chen; David A. Dixon; Aisling Doyle; Margarita Garcia-Hernandez; Eva Huala; Gabriel Lander; Mary Montoya; Neil Miller; Lukas A. Mueller; et al. (Nucleic Acids Res., 2003)

The CMH Warehouse: A Catalog of Genetic Variation in Patients of a Children's Hospital. - Neil Miller; Byunggil Yoo; Greyson Twist; Shane Corder (BCB, 2016)

OMKar: Optical Map Based Automated Karyotyping of Genomes to Identify Constitutional Disorders. - Siavash Raeisi Dehkordi; Zhaoyang Jia; Joey Estabrook; Jen Hauenstein; Neil Miller; Naz Güleray-Lafci; Jürgen Neesen; Alex Hastie; Andy Wing Chun Pang; Paul Dremsek; Vineet Bafna (RECOMB, 2025)