Computing stable models in parallel. - Raphael A. Finkel; Victor W. Marek; Neil Moore; Miroslaw Truszczynski (Answer Set Programming, 2001)

On Visualization of Complex Image-Basedmarkup. - Jerzy W. Jaromczyk; Miroslaw Kowaluk; Neil Moore (ICCVG, 2004)

A web interface to image-based concurrent markup using image maps. - Jerzy W. Jaromczyk; Miroslaw Kowaluk; Neil Moore (WIDM, 2004)

Building Image-based Electronic Editions using the Edition Production Technology. - Alex Dekhtyar; Ionut Emil Iacob; Jerzy W. Jaromczyk; Kevin Kiernan; Neil Moore; Dorothy C. Porter (Bull. IEEE Tech. Comm. Digit. Libr., 2005)

Support for XML markup of image-based electronic editions. - Alex Dekhtyar; Ionut Emil Iacob; Jerzy W. Jaromczyk; Kevin Kiernan; Neil Moore; Dorothy C. Porter (Int. J. Digit. Libr., 2006)

The Halting Problem and Undecidability of Document Generation under Access Control for Tree Updates. - Neil Moore (LATA, 2009)

Visualizing and sharing results in bioinformatics projects: GBrowse and GenBank exports. - Elissaveta G. Arnaoudova; Philip J. Bowens; Roger G. Chui; Randy D. Dinkins; Uljana Hesse; Jerzy W. Jaromczyk; Mitchell Martin; Paul Maynard; Neil Moore; Christopher L. Schardl (BMC Bioinform., 2009)

Reconciling two models of multihierarchical markup. - Neil Moore (WebDB, 2010)

Phylotree - a toolkit for computing experiments with distance-based methods for genome coevolution. - Elissaveta G. Arnaoudova; Jerzy W. Jaromczyk; Neil Moore; Christopher L. Schardl; Ruriko Yoshida (BMC Bioinform., 2010)

Finding a longest open reading frame of an alternatively spliced gene. - Neil Moore; Jerzy W. Jaromczyk (BIBM Workshops, 2011)

Computational complexity of the problem of tree generation under fine-grained access control policies. - Neil Moore (Inf. Comput., 2011)

Finding long protein products of alternatively spliced genes. - Neil Moore; Jerzy W. Jaromczyk; Christopher L. Schardl (BMC Bioinform., 2012)

A linear-time algorithm for finding a maximum-length ORF in a splice graph. - Jerzy W. Jaromczyk; Neil Moore; Christopher L. Schardl (Int. J. Comput. Biol. Drug Des., 2012)

FPD2GB2: Automating a transition from a customized genome browser to GBrowse2. - Roger G. Chui; Jerzy W. Jaromczyk; Neil Moore; Christopher L. Schardl (BMC Bioinform., 2013)

Using HPC for teaching and learning bioinformatics software: Benefits and challenges. - Tyler Parke; Mark L. Farman; Elizabeth Farnsworth; Derek Fox; Jerzy W. Jaromczyk; Jolanta Jaromczyk; Neil Moore; Christopher L. Schardl; Ruriko Yoshida; Patrick Calie (BMC Bioinform., 2013)

Video game bots as a theme for student software competitions. - Matthew Fahrbach; Jerzy W. Jaromczyk; Roy David Mobley; Neil Moore (CGAMES, 2014)

An adaptive landscape for training in the essentials of next gen sequencing data acquisition and bioinformatic analysis. - Mark L. Farman; Patrick Calie; Jerzy W. Jaromczyk; Jolanta Jaromczyk; Neil Moore; Daniel R. Harris; Christopher L. Schardl (BMC Bioinform., 2014)

Automating deployment of several GBrowse instances. - Neil Moore; Jerzy W. Jaromczyk; Christopher L. Schardl; Joedocei Hill; Devin Wright (BMC Bioinform., 2014)

Validation and quality assurance for genome browser database exports. - Roger G. Chui; Jerzy W. Jaromczyk; Neil Moore; Christopher L. Schardl (BMC Bioinform., 2015)

Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016: Cadiz, KY, USA. 8-10 April 2016. - Eric C. Rouchka; Julia H. Chariker; Benjamin J. Harrison; Juw Won Park; Xueyuan Cao; Stanley Pounds; Susana C. Raimondi; James R. Downing; Raul C. Ribeiro; Jeffrey Rubnitz; Jatinder Lamba; Bernie J. Daigle Jr.; et al. (BMC Bioinform., 2016)

Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2016: bioinformatics: Burns, TN, USA. April 21-23, 2017. - Eric C. Rouchka; Julia H. Chariker; David Tieri; Juw Won Park; Shreedharkumar D. Rajurkar; Vikas Singh; Nishchal K. Verma; Yan Cui 001; Mark L. Farman; Bradford Condon; Neil Moore; Jerzy W. Jaromczyk; et al. (BMC Bioinform., 2017)

CURatio: Genome-Wide Phylogenomic Analysis Method Using Ratios of Total Branch Lengths. - Qiwen Kang; Neil Moore; Christopher L. Schardl; Ruriko Yoshida (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

RNA-clique: a method for computing genetic distances from RNA-seq data. - Andrew C. Tapia; Jerzy W. Jaromczyk; Neil Moore; Christopher L. Schardl (BMC Bioinform., 2024)