Model-driven user interfaces for bioinformatics data resources: regenerating the wheel as an alternative to reinventing it. - Kevin L. Garwood; Christopher Garwood; Cornelia Hedeler; Tony Griffiths; Neil Swainston; Stephen G. Oliver; Norman W. Paton (BMC Bioinform., 2006)

Pride Wizard: generation of standards compliant quantitative proteomics data. - Neil Swainston; Jennifer A. Siepen; Andrew R. Jones; Sarah R. Hart; Henning Hermjakob; Philip Jones; Simon J. Hubbard (BMC Syst. Biol., 2007)

libAnnotationSBML: a library for exploiting SBML annotations. - Neil Swainston; Pedro Mendes 001 (Bioinform., 2009)

Information management for high content live cell imaging. - Daniel Jameson; David A. Turner; John Ankers; Stephnie Kennedy; Sheila Ryan; Neil Swainston; Tony Griffiths; David G. Spiller; Stephen G. Oliver; Michael R. H. White; Douglas B. Kell; Norman W. Paton (BMC Bioinform., 2009)

Integrative Information Management for Systems Biology. - Neil Swainston; Daniel Jameson; Peter Li; Irena Spasic; Pedro Mendes 001; Norman W. Paton (DILS, 2010)

Systematic integration of experimental data and models in systems biology. - Peter Li; Joseph O. Dada; Daniel Jameson; Irena Spasic; Neil Swainston; Kathleen Carroll; Warwick B. Dunn; Farid Khan; Naglis Malys; Hanan L. Messiha; Evangelos Simeonidis; Dieter Weichart; et al. (BMC Bioinform., 2010)

Further developments towards a genome-scale metabolic model of yeast. - Paul D. Dobson; Kieran Smallbone; Daniel Jameson; Evangelos Simeonidis; Karin Lanthaler; Pinar Pir; Chuan Lu; Neil Swainston; Warwick B. Dunn; Paul Fisher; Duncan Hull; Marie Brown; et al. (BMC Syst. Biol., 2010)

Integration of metabolic databases for the reconstruction of genome-scale metabolic networks. - Karin Radrich; Yoshimasa Tsuruoka; Paul D. Dobson; Albert Gevorgyan; Neil Swainston; Gino Baart; Jean-Marc Schwartz (BMC Syst. Biol., 2010)

Towards a genome-scale kinetic model of cellular metabolism. - Kieran Smallbone; Evangelos Simeonidis; Neil Swainston; Pedro Mendes 001 (BMC Syst. Biol., 2010)

A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2. - Ines Thiele; Daniel R. Hyduke; Benjamin Steeb; Guy Fankam; Douglas K. Allen; Susanna Bazzani; Pep Charusanti; Feng-Chi Chen; Ronan M. T. Fleming; Chao A. Hsiung; Sigrid C. J. De Keersmaecker; Yu-Chieh Liao; et al. (BMC Syst. Biol., 2011)

The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networks. - Neil Swainston; Kieran Smallbone; Pedro Mendes 001; Douglas B. Kell; Norman W. Paton (J. Integr. Bioinform., 2011)

Improving metabolic flux predictions using absolute gene expression data. - Dave Lee; Kieran Smallbone; Warwick B. Dunn; Ettore Murabito; Catherine Winder; Douglas B. Kell; Pedro Mendes 001; Neil Swainston (BMC Syst. Biol., 2012)

Path2Models: large-scale generation of computational models from biochemical pathway maps. - Finja Büchel; Nicolas Rodriguez 001; Neil Swainston; Clemens Wrzodek; Tobias Czauderna; Roland Keller; Florian Mittag; Michael Schubert; Mihai Glont; Martin Golebiewski; Martijn P. van Iersel; Sarah M. Keating; et al. (BMC Syst. Biol., 2013)

GeneGenie: optimized oligomer design for directed evolution. - Neil Swainston; Andrew Currin; Philip J. Day; Douglas B. Kell (Nucleic Acids Res., 2014)

ChEBI for systems biology and metabolic modelling. - Janna Hastings; Neil Swainston; Venkatesh Muthukrishnan; Namrata Kale; Adriano Dekker; Gareth I. Owen; Steve Turner; Pedro Mendes 001; Christoph Steinbeck (ICBO, 2015)

libChEBI: an API for accessing the ChEBI database. - Neil Swainston; Janna Hastings; Adriano Dekker; Venkatesh Muthukrishnan; John W. May; Christoph Steinbeck; Pedro Mendes 001 (J. Cheminformatics, 2016)

ChEBI in 2016: Improved services and an expanding collection of metabolites. - Janna Hastings; Gareth I. Owen; Adriano Dekker; Marcus Ennis; Namrata Kale; Venkatesh Muthukrishnan; Steve Turner; Neil Swainston; Pedro Mendes 001; Christoph Steinbeck (Nucleic Acids Res., 2016)

CodonGenie: optimised ambiguous codon design tools. - Neil Swainston; Andrew Currin; Lucy Green; Rainer Breitling; Philip J. Day; Douglas B. Kell (PeerJ Prepr., 2017)

Selenzyme: enzyme selection tool for pathway design. - Pablo Carbonell; Jerry Wong; Neil Swainston; Eriko Takano; Nicholas J. Turner; Nigel S. Scrutton; Douglas B. Kell; Rainer Breitling; Jean-Loup Faulon (Bioinform., 2018)

PartsGenie: an integrated tool for optimizing and sharing synthetic biology parts. - Neil Swainston; Mark Dunstan; Adrian J. Jervis; Christopher J. Robinson; Pablo Carbonell; Alan R. Williams; Jean-Loup Faulon; Nigel S. Scrutton; Douglas B. Kell (Bioinform., 2018)

DeepGraphMolGen, a multi-objective, computational strategy for generating molecules with desirable properties: a graph convolution and reinforcement learning approach. - Yash Khemchandani; Stephen O'Hagan; Soumitra Samanta; Neil Swainston; Timothy J. Roberts; Danushka Bollegala; Douglas B. Kell (J. Cheminformatics, 2020)